Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	XYLT2	Gene	0	11.03	26.14	20.36	20.23	68.30	15.02	93.22
2	17003	Transcript	0	12.33	9.72	16.32	7.65	43.87	4.53	56.97
3	376550	Transcript	0	2.24	2.18	3.55	6.94	7.40	1.29	1.50
4	ER1a	ExonRegion	0	0.55	0.37	0.14	0.97	1.93	0.00	1.74
5	E1_Ab	KnownBoundary	0	0.00	3.76	0.75	1.22	13.21	0.00	9.10
6	ER1b	ExonRegion	1	0.42	8.76	3.81	5.41	26.34	0.67	36.42
7	E1a_E2a	KnownJunction	0	0.88	6.62	1.38	0.00	3.07	0.00	14.82
8	I1	Intron	0	3.47	10.19	4.43	7.32	7.59	8.99	7.43
9	I1_SR2	SilentIntronRegion	0	3.48	10.78	3.74	5.47	6.95	7.50	3.66
10	I1_AR2	ActiveIntronRegion	0	3.47	8.99	4.20	6.39	9.34	7.31	9.60
11	I1_SR3	SilentIntronRegion	0	4.77	13.81	6.93	9.46	8.46	14.34	10.95
12	I1_AR3	ActiveIntronRegion	0	3.82	14.41	7.55	17.51	8.28	17.12	11.89
13	I1_SR4	SilentIntronRegion	0	1.72	10.76	4.31	11.15	7.80	8.00	8.12
14	E2_Aa	NovelBoundary	1	2.54	7.04	4.56	23.00	6.09	13.48	11.36
15	ER2a	ExonRegion	0	4.26	23.04	7.89	15.53	40.26	10.23	58.88
16	E2_Da	NovelBoundary	0	3.34	11.27	6.93	8.51	2.19	10.32	5.65
17	E2a_E3a	KnownJunction	0	9.66	16.50	18.34	18.83	56.34	10.00	83.47
18	I2	Intron	0	2.80	11.00	1.33	6.31	1.30	9.45	3.96
19	I2_SR1	SilentIntronRegion	0	2.82	11.08	1.34	6.35	1.31	9.51	3.98
20	E3_Aa	NovelBoundary	0	2.54	15.58	1.77	9.02	1.01	11.95	8.23
21	ER3a	ExonRegion	0	8.30	27.72	18.32	17.01	75.52	16.91	90.38
22	E3_Da	NovelBoundary	0	0.98	15.34	2.72	9.51	0.00	10.53	3.77
23	E3a_E4a	KnownJunction	1	7.08	19.28	29.50	7.26	82.92	12.92	118.00
24	I3	Intron	0	0.63	9.13	1.14	5.57	0.75	6.53	5.43
25	I3_SR1	SilentIntronRegion	0	0.64	9.19	1.14	5.62	0.76	6.58	5.47
26	E4_Aa	NovelBoundary	0	0.95	14.34	1.61	7.12	0.00	6.16	12.86
27	ER4a	ExonRegion	0	8.48	30.22	26.56	13.61	76.88	14.10	115.89
28	E4_Da	NovelBoundary	0	1.72	16.97	3.08	9.24	1.13	14.12	5.23
29	E4a_E5a	KnownJunction	1	7.58	18.99	22.48	6.88	121.35	7.40	150.09
30	I4	Intron	0	2.58	12.65	3.62	8.10	1.39	10.46	9.30
31	I4_SR1	SilentIntronRegion	0	2.59	12.70	3.64	8.14	1.40	10.51	9.34
32	E5_Aa	NovelBoundary	0	5.57	18.86	10.82	4.31	4.10	8.98	5.19
33	ER5a	ExonRegion	1	16.57	30.51	33.13	13.01	110.84	4.93	139.19
34	E5_Da	NovelBoundary	0	0.00	15.74	4.53	7.37	2.19	13.40	10.91
35	E5a_E6a	KnownJunction	1	25.24	29.50	39.68	22.76	120.82	1.45	127.59
36	I5	Intron	0	1.25	8.76	2.06	6.61	0.42	5.13	6.15
37	I5_SR1	SilentIntronRegion	0	1.27	8.83	2.08	6.67	0.42	5.18	6.20
38	E6_Aa	NovelBoundary	0	2.87	12.27	3.77	9.02	3.41	7.64	10.15
39	ER6a	ExonRegion	0	21.64	39.44	35.77	32.17	119.92	14.61	190.96
40	E6_Da	NovelBoundary	1	1.39	18.78	3.97	2.65	0.00	4.85	5.50
41	E6a_E7a	KnownJunction	0	19.39	30.74	36.31	29.58	181.77	10.69	209.61
42	E7_Aa	NovelBoundary	0	2.00	16.05	2.21	15.98	2.33	13.16	15.88
43	ER7a	ExonRegion	0	19.72	41.74	37.79	31.34	158.40	13.56	206.55
44	E7_Da	NovelBoundary	1	4.59	20.91	3.81	3.79	3.23	17.10	9.19
45	E7a_E8a	KnownJunction	0	16.82	34.15	38.01	20.86	173.01	9.11	163.42
46	I7	Intron	0	2.03	8.51	2.67	5.69	2.32	9.73	9.21
47	I7_SR1	SilentIntronRegion	0	2.05	8.58	2.69	5.73	2.34	9.81	9.27
48	ER8a	ExonRegion	0	15.47	32.20	25.54	27.36	105.88	10.54	129.43
49	E8_Da	NovelBoundary	0	2.90	6.73	4.08	7.78	0.00	10.13	6.22
50	E8a_E9a	KnownJunction	1	15.22	18.02	22.79	12.43	56.78	0.00	94.43
51	E8a_E10a	KnownJunction	0	2.24	2.18	3.55	6.94	7.40	1.29	1.50
52	I8	Intron	0	0.41	5.53	3.33	3.33	1.31	8.87	4.87
53	I8_SR1	SilentIntronRegion	0	0.42	5.59	3.37	3.37	1.33	8.97	4.91
54	E9_Aa	NovelBoundary	0	1.03	4.91	2.64	4.44	0.00	11.10	5.95
55	ER9a	ExonRegion	0	11.75	18.07	18.14	11.91	67.54	9.79	76.84
56	E9_Da	NovelBoundary	0	4.37	12.82	1.19	8.59	3.02	3.27	3.84
57	E9a_E10a	KnownJunction	1	34.11	9.72	39.19	10.46	85.83	9.17	107.82
58	I9	Intron	0	4.99	7.93	3.81	5.94	5.18	9.18	6.65
59	I9_AR1	ActiveIntronRegion	0	6.04	9.05	4.73	6.18	6.23	10.79	7.59
60	E10_Aa	NovelBoundary	0	6.61	15.03	11.50	9.62	7.70	14.07	6.02
61	ER10a	ExonRegion	0	17.06	26.26	28.11	21.71	73.47	11.43	102.24
62	E10_Da	NovelBoundary	0	1.47	19.62	5.65	8.37	3.00	11.04	8.43
63	E10a_E11a	KnownJunction	1	6.19	18.26	20.03	9.97	105.21	5.65	138.37
64	I10	Intron	1	5.99	18.15	10.04	13.50	9.89	22.69	13.31
65	I10_AR1	ActiveIntronRegion	0	3.35	9.58	3.89	4.65	8.58	5.11	5.63
66	I10_SR1	SilentIntronRegion	1	5.64	15.29	9.58	15.38	12.49	8.68	10.30
67	I10_AR2	ActiveIntronRegion	0	6.48	19.95	11.13	14.76	9.81	27.33	14.96
68	E11_Aa	NovelBoundary	0	6.21	20.31	8.95	8.61	9.82	14.15	14.86
69	ER11a	ExonRegion	0	10.46	25.74	19.28	23.27	52.73	23.79	72.97
70	ER11b	ExonRegion	0	0.00	2.43	1.35	2.49	7.29	3.68	4.05
71	IG37	Intergenic	0	4.41	14.25	5.71	10.49	2.61	15.30	6.97
72	IG37_AR1	ActiveIntergenicRegion	0	3.26	13.28	4.44	19.21	4.15	20.62	4.31
73	IG37_AR2	ActiveIntergenicRegion	0	4.48	17.67	7.07	12.13	5.87	27.66	5.65
74	IG37_SR1	SilentIntergenicRegion	0	4.72	10.50	5.40	10.09	3.23	15.26	7.50
75	IG37_AR4	ActiveIntergenicRegion	0	4.47	14.57	4.64	11.42	2.06	16.19	7.06
76	IG37_SR2	SilentIntergenicRegion	0	6.24	15.79	8.44	10.52	3.43	14.63	8.42
77	IG37_AR5	ActiveIntergenicRegion	0	2.87	19.66	6.47	10.92	2.91	14.11	7.64
78	IG37_SR3	SilentIntergenicRegion	0	2.75	15.06	4.92	8.98	1.77	15.04	5.62
79	IG37_AR6	ActiveIntergenicRegion	0	1.54	4.10	5.42	8.73	0.81	4.75	1.35
80	IG37_SR4	SilentIntergenicRegion	0	2.55	5.78	4.19	5.56	2.30	10.34	2.14