Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	BRCA1	Gene	0	6.39	0.82	2.64	0.64	89.34	0.52	9.51
2	354071	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	353540	Transcript	0	1.89	0.00	0.00	0.00	9.45	0.00	0.63
4	309486	Transcript	0	0	0	0	0	0	0	0
5	393683	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	357654	Transcript	0	0	0	0	0	0	0	0
7	346315	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	351666	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	352993	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	393680	Transcript	0	0.16	0.00	0.00	0.00	0.42	0.00	0.00
11	393691	Transcript	0	2.40	1.09	2.02	0.88	21.35	0.72	1.30
12	ER1a	ExonRegion	0	0.82	0.51	0.31	0.00	28.22	0.00	1.94
13	E1a_E3a	KnownJunction	0	0.68	0.00	1.49	0.00	2.35	0.00	0.57
14	E1a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER2a	ExonRegion	0	4.80	2.17	4.04	1.75	25.34	1.44	2.03
16	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	17.36	0.00	0.56
17	E3_Aa	NovelBoundary	0	24.17	7.38	14.92	3.96	14.32	0.00	1.52
18	ER3a	ExonRegion	0	2.48	0.52	1.80	0.00	35.31	0.00	5.32
19	E3_Da	NovelBoundary	0	30.68	4.76	6.16	1.65	3.02	3.24	0.00
20	E3a_E4a	KnownJunction	0	1.03	1.63	0.73	0.00	49.59	0.00	7.74
21	ER4a	ExonRegion	0	3.33	0.76	1.56	0.00	70.61	0.07	6.62
22	E4a_E5a	KnownJunction	0	4.52	0.00	2.67	0.00	105.31	0.00	3.75
23	ER5a	ExonRegion	0	3.93	0.00	2.58	0.00	110.16	1.15	5.45
24	E5a_E6a	KnownJunction	0	2.79	0.00	0.59	0.00	70.03	0.00	6.85
25	ER6a	ExonRegion	0	3.19	0.35	1.58	0.00	89.21	0.36	7.06
26	E6a_E7a	KnownJunction	0	6.89	1.42	0.59	0.00	91.54	1.53	7.87
27	ER7a	ExonRegion	0	8.04	1.08	1.92	0.92	108.43	0.44	6.46
28	E7a_E8a	KnownJunction	0	7.44	0.00	0.60	2.87	91.50	0.00	9.62
29	ER8a	ExonRegion	0	7.20	0.72	1.71	1.41	96.23	0.49	10.00
30	E8a_E9a	KnownJunction	0	3.94	1.16	2.53	3.22	62.93	1.66	3.04
31	E8a_E11a	KnownJunction	0	1.89	0.00	0.00	0.00	9.45	0.00	0.63
32	E8a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER9a	ExonRegion	0	7.30	1.06	2.71	2.09	78.27	0.91	3.86
34	E9a_E10a	KnownJunction	0	7.48	1.52	1.65	0.00	109.85	0.00	3.53
35	ER10a	ExonRegion	0	6.20	0.77	2.38	0.06	101.56	0.65	7.51
36	E10a_E11a	KnownJunction	0	3.14	0.00	2.70	0.00	85.85	1.66	8.41
37	E10a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER11a	ExonRegion	0	6.11	0.65	2.52	0.58	82.85	0.15	10.12
39	E11a_E12a	KnownJunction	0	6.49	0.00	1.81	0.00	112.61	0.00	16.60
40	ER12a	ExonRegion	0	6.49	0.00	3.19	0.46	128.98	1.05	14.04
41	E12a_E13a	KnownJunction	0	6.34	0.00	4.56	1.68	140.92	0.00	7.08
42	ER13a	ExonRegion	0	8.46	0.71	5.92	0.33	153.50	4.95	11.47
43	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E13a_E15a	KnownJunction	0	10.56	1.47	3.49	0.00	147.54	7.91	7.98
45	E13a_E15b	NovelJunction	0	3.39	0.00	4.11	0.00	48.92	0.00	2.84
46	E13a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E13a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E14_Aa	NovelBoundary	0	51.72	579.81	69.01	282.70	9.27	349.04	146.60
49	ER14a	ExonRegion	0	0.49	0.00	0.00	0.00	1.25	0.00	0.00
50	E14_Da	NovelBoundary	0	12136.71	12497.82	9164.74	12525.46	4766.20	16482.85	11741.93
51	E14a_E15b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER15a	ExonRegion	0	14.02	1.21	7.45	0.00	166.02	6.74	10.79
53	ER15b	ExonRegion	0	13.13	0.46	6.05	0.00	172.18	1.20	12.92
54	E15a_E16a	KnownJunction	0	13.50	0.00	4.87	0.00	181.29	0.00	14.86
55	ER16a	ExonRegion	0	8.38	0.00	3.22	0.00	140.02	0.00	18.16
56	E16a_E17a	KnownJunction	0	8.58	0.00	1.80	0.00	145.19	0.00	18.44
57	ER17a	ExonRegion	0	4.66	0.00	1.33	0.00	109.97	0.00	15.79
58	E17a_E18a	KnownJunction	0	4.56	0.00	0.59	0.00	104.68	0.00	9.83
59	ER18a	ExonRegion	0	4.28	0.00	1.24	0.00	114.75	0.00	10.21
60	E18a_E19a	KnownJunction	0	2.47	0.00	0.78	0.00	146.06	0.00	9.83
61	ER19a	ExonRegion	0	5.54	0.00	1.56	0.00	138.93	0.00	8.99
62	E19a_E20a	KnownJunction	0	8.78	0.00	2.41	0.00	129.97	0.00	7.50
63	ER20a	ExonRegion	0	10.10	0.00	2.59	0.00	139.49	0.93	9.15
64	E20a_E21a	KnownJunction	0	8.48	0.00	1.75	0.00	150.88	1.66	7.51
65	ER21a	ExonRegion	0	8.21	0.00	1.42	0.00	135.89	1.23	10.89
66	E21a_E22a	KnownJunction	0	7.04	0.00	3.31	0.00	136.75	1.66	6.28
67	ER22a	ExonRegion	0	5.85	0.00	2.72	0.39	177.58	0.82	10.11
68	E22a_E23a	KnownJunction	0	5.97	0.00	2.13	1.30	146.45	0.00	12.91
69	ER23a	ExonRegion	0	5.43	0.00	2.03	0.99	124.76	0.00	13.60
70	E23a_E24a	KnownJunction	0	4.72	0.00	1.28	0.00	84.95	0.00	13.47
71	ER24a	ExonRegion	0	4.45	0.00	2.57	0.00	94.55	0.00	7.56
72	E24a_E25a	KnownJunction	0	1.60	0.00	2.30	0.00	90.46	0.00	5.09
73	ER25a	ExonRegion	0	8.22	1.64	3.00	1.12	91.46	0.85	9.17