Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TOP3A	Gene	0	35.49	37.32	70.89	79.31	111.18	41.67	36.87
2	321105	Transcript	0	39.72	38.79	83.92	87.12	133.53	47.26	41.49
3	ER1a	ExonRegion	0	13.80	16.60	24.14	41.20	34.07	20.93	12.63
4	E1a_E2a	KnownJunction	0	19.91	36.86	58.31	70.73	73.77	32.70	20.58
5	ER2a	ExonRegion	0	27.10	34.74	64.84	94.31	80.63	42.58	24.06
6	E2a_E3a	KnownJunction	0	26.85	26.35	56.27	99.26	81.95	51.91	26.99
7	E2a_E4a	NovelJunction	1	0.77	0.00	3.78	14.93	1.84	14.31	0.00
8	ER3a	ExonRegion	0	25.29	38.83	58.91	78.00	81.21	47.17	26.60
9	E3a_E4a	KnownJunction	0	31.29	32.81	67.01	64.07	83.77	38.30	24.16
10	ER4a	ExonRegion	0	31.04	32.96	73.19	64.55	93.16	50.86	32.58
11	E4a_E5a	KnownJunction	0	21.20	36.70	65.41	73.17	96.11	46.36	30.14
12	ER5a	ExonRegion	0	27.30	47.19	70.07	81.14	110.33	48.33	44.20
13	E5a_E6a	KnownJunction	0	38.94	59.29	78.86	77.78	114.99	57.59	49.44
14	ER6a	ExonRegion	0	32.94	52.37	77.57	88.92	107.35	54.11	40.98
15	E6_Da	NovelBoundary	1	1.00	11.01	1.28	1.60	2.35	0.00	0.73
16	E6a_E7a	KnownJunction	0	29.39	45.13	87.11	81.00	109.16	48.45	39.17
17	ER7a	ExonRegion	0	25.34	41.54	66.55	83.15	83.28	49.28	31.01
18	E7a_E8a	KnownJunction	0	34.50	38.88	90.04	95.25	92.12	55.21	32.05
19	E8_Aa	NovelBoundary	1	0.00	10.48	0.60	0.00	1.18	0.00	0.00
20	ER8a	ExonRegion	0	32.04	37.74	95.24	83.41	125.17	47.07	42.36
21	E8_Da	NovelBoundary	1	1.69	10.53	0.86	1.30	0.95	0.00	1.50
22	E8a_E9a	KnownJunction	1	24.53	32.47	100.76	87.45	103.39	58.45	38.64
23	ER9a	ExonRegion	0	27.44	35.18	78.07	90.75	123.30	49.61	41.66
24	E9a_E10a	KnownJunction	0	31.19	36.86	77.38	94.41	137.99	49.07	37.36
25	ER10a	ExonRegion	0	47.10	47.32	122.99	99.80	148.07	58.05	59.84
26	E10a_E11a	KnownJunction	0	41.16	45.29	122.26	89.54	142.28	76.73	61.48
27	E10a_E12a	NovelJunction	0	3.49	4.44	10.86	2.44	12.31	1.05	1.78
28	ER11a	ExonRegion	0	31.84	33.29	84.91	72.56	142.39	47.88	46.93
29	E11a_E12a	KnownJunction	0	26.32	24.43	68.12	72.96	131.72	30.47	30.91
30	I11	Intron	0	3.40	7.90	1.88	2.66	3.28	2.90	2.68
31	I11_SR1	SilentIntronRegion	0	3.41	7.92	1.88	2.66	3.29	2.90	2.69
32	E12_Aa	NovelBoundary	0	3.69	12.79	2.95	21.86	3.16	5.95	1.25
33	ER12a	ExonRegion	0	39.31	42.15	79.03	111.92	158.93	46.44	48.73
34	E12_Da	NovelBoundary	0	2.65	14.24	2.31	4.50	0.00	4.40	4.90
35	E12a_E13a	KnownJunction	0	56.26	36.62	107.16	123.94	182.56	57.43	55.62
36	I12	Intron	1	1.88	10.12	0.55	3.64	2.39	0.00	1.32
37	I12_SR1	SilentIntronRegion	1	2.10	11.10	0.56	3.92	2.66	0.00	1.48
38	E13_Aa	NovelBoundary	1	1.02	17.81	1.38	2.84	6.16	2.44	3.35
39	ER13a	ExonRegion	0	35.69	43.44	63.92	107.30	169.46	40.15	46.51
40	E13_Da	NovelBoundary	1	1.02	17.39	5.63	11.11	2.26	3.14	3.73
41	E13a_E14a	KnownJunction	0	41.91	26.85	51.55	63.26	199.06	24.04	39.05
42	I13	Intron	1	2.43	12.55	1.88	2.19	3.49	1.79	3.28
43	I13_AR1	ActiveIntronRegion	1	2.43	11.83	2.55	0.66	3.67	2.77	5.14
44	I13_SR1	SilentIntronRegion	1	1.63	16.51	2.85	2.08	4.55	2.27	3.58
45	I13_AR2	ActiveIntronRegion	1	4.36	14.70	1.24	2.88	3.83	2.54	1.69
46	I13_SR2	SilentIntronRegion	1	1.59	7.78	1.27	2.38	2.23	0.35	3.52
47	E14_Aa	NovelBoundary	0	6.56	15.71	6.31	14.52	3.07	5.44	7.41
48	ER14a	ExonRegion	0	61.19	24.72	93.73	88.57	202.70	36.06	44.14
49	E14_Da	NovelBoundary	0	1.84	12.24	1.48	4.50	0.00	4.64	1.86
50	E14a_E15a	KnownJunction	0	74.27	32.60	107.55	72.06	215.94	48.08	44.46
51	E15_Aa	NovelBoundary	1	4.02	12.27	0.00	1.46	2.03	2.47	0.00
52	ER15a	ExonRegion	1	134.43	73.34	186.40	144.02	307.39	70.72	63.43
53	E15a_E16a	KnownJunction	0	100.16	65.28	166.39	133.21	248.65	43.52	55.29
54	ER16a	ExonRegion	0	85.77	55.61	138.33	113.85	270.40	55.20	67.50
55	E16a_E17a	KnownJunction	0	26.89	47.66	65.89	82.19	127.46	40.20	49.34
56	I16_SR2	SilentIntronRegion	1	6.46	9.19	2.44	1.30	1.67	0.58	2.59
57	I16_AR2	ActiveIntronRegion	0	4.01	9.98	2.69	2.66	0.83	1.91	1.39
58	ER17a	ExonRegion	0	31.89	35.39	80.06	82.87	127.88	46.01	56.13
59	E17_Da	NovelBoundary	1	1.02	12.95	0.80	1.54	4.63	1.50	2.48
60	E17a_E18a	KnownJunction	0	57.61	26.90	120.51	110.78	232.00	55.82	82.38
61	I17_AR4	ActiveIntronRegion	1	1.56	8.05	1.21	0.46	1.02	1.54	1.77
62	ER18a	ExonRegion	0	22.07	31.89	45.42	67.15	65.11	31.34	29.43
63	E18_Da	NovelBoundary	1	1.92	14.79	0.66	3.03	3.50	0.00	0.00
64	E18a_E19a	KnownJunction	1	23.65	22.65	45.96	65.64	46.75	51.35	26.10
65	I18	Intron	1	1.18	8.14	0.63	2.04	1.78	1.83	1.78
66	I18_SR1	SilentIntronRegion	0	1.19	8.16	0.63	2.05	1.78	1.83	1.78
67	ER19a	ExonRegion	0	32.18	37.42	65.23	73.15	89.99	41.13	33.18
68	IG13	Intergenic	0	5.07	11.41	8.77	9.53	8.88	6.53	4.46
69	IG13_AR25	ActiveIntergenicRegion	0	17.78	18.99	41.64	40.52	64.82	26.06	22.91
70	IG13_AR24	ActiveIntergenicRegion	0	9.62	9.01	11.76	11.46	25.37	3.60	5.85
71	IG13_AR23	ActiveIntergenicRegion	0	17.95	18.66	28.55	28.79	62.51	18.50	14.35
72	IG13_AR22	ActiveIntergenicRegion	0	12.69	14.48	25.92	24.84	47.67	19.68	11.74
73	IG13_AR21	ActiveIntergenicRegion	0	3.80	4.32	9.78	7.97	18.76	8.58	2.47
74	IG13_AR16	ActiveIntergenicRegion	0	2.18	8.42	6.27	9.61	6.24	8.58	1.45
75	IG13_SR5	SilentIntergenicRegion	0	5.11	7.06	7.34	12.21	1.63	8.15	2.06
76	IG13_AR15	ActiveIntergenicRegion	0	9.23	6.88	13.23	12.98	3.57	8.66	5.66
77	IG13_AR14	ActiveIntergenicRegion	0	7.92	9.92	15.73	15.69	6.10	9.77	7.06
78	IG13_AR13	ActiveIntergenicRegion	0	3.46	13.14	13.97	16.68	4.25	13.18	5.35
79	IG13_AR12	ActiveIntergenicRegion	0	4.53	14.58	13.75	19.70	1.70	14.34	4.25
80	IG13_AR11	ActiveIntergenicRegion	0	5.78	9.72	13.17	14.85	4.30	12.77	4.58
81	IG13_SR4	SilentIntergenicRegion	0	4.10	9.46	5.18	5.53	1.67	4.54	1.81
82	IG13_AR10	ActiveIntergenicRegion	0	2.03	9.28	1.72	2.91	0.88	1.27	2.63
83	IG13_AR9	ActiveIntergenicRegion	0	3.22	13.14	3.39	1.48	0.81	2.45	0.51
84	IG13_AR8	ActiveIntergenicRegion	0	1.66	10.93	3.39	1.25	0.81	1.53	0.00
85	IG13_AR3	ActiveIntergenicRegion	0	2.36	13.42	2.84	3.06	1.25	0.19	1.55
86	IG13_AR1	ActiveIntergenicRegion	0	2.61	33.56	2.17	1.40	5.49	4.15	3.75