Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	POLDIP2	Gene	0	166.94	155.76	222.84	181.97	253.44	99.84	285.82
2	3607	Transcript	0	215.65	197.30	297.05	224.51	333.27	125.47	407.08
3	ER1a	ExonRegion	0	5.14	11.65	7.56	8.41	3.02	4.68	3.89
4	E1a_E2a	KnownJunction	0	4.11	19.94	4.77	19.13	0.00	17.04	9.83
5	ER2a	ExonRegion	0	32.61	73.48	46.35	47.09	44.45	47.34	79.22
6	E2a_E3a	KnownJunction	0	94.62	137.22	136.91	109.39	111.48	92.86	161.34
7	ER3a	ExonRegion	0	158.16	184.72	230.07	203.94	258.67	133.23	252.63
8	E3a_E4a	KnownJunction	0	172.29	176.75	265.15	193.48	278.82	130.57	307.95
9	I3	Intron	1	23.18	47.44	10.24	18.89	0.07	6.49	1.08
10	I3_SR1	SilentIntronRegion	1	23.29	47.71	10.30	19.00	0.07	6.53	1.09
11	E4_Aa	NovelBoundary	1	39.37	88.32	16.84	39.63	1.13	19.70	3.01
12	ER4a	ExonRegion	0	147.39	247.98	269.89	289.44	282.74	180.71	395.19
13	E4_Da	NovelBoundary	1	49.05	139.08	16.84	48.63	0.00	14.12	3.10
14	E4a_E5a	KnownJunction	0	196.92	228.96	353.55	289.20	218.84	177.01	480.35
15	I4	Intron	1	21.44	62.36	13.19	23.93	0.29	6.95	2.94
16	I4_SR1	SilentIntronRegion	1	35.90	100.77	19.50	38.74	0.33	11.82	4.43
17	ER5a	ExonRegion	0	245.65	290.16	374.40	357.85	361.04	219.59	553.55
18	E5_Da	NovelBoundary	1	12.45	69.33	6.98	22.38	2.19	5.17	3.05
19	E5a_E6a	KnownJunction	0	248.78	252.07	384.55	312.36	383.39	171.36	530.16
20	ER6a	ExonRegion	0	322.00	246.58	455.42	305.11	458.33	168.85	648.83
21	E6a_E7a	KnownJunction	0	367.51	278.61	513.98	320.95	613.34	174.73	766.66
22	E7_Aa	NovelBoundary	1	139.76	21.60	193.28	9.75	5.39	6.99	9.33
23	ER7a	ExonRegion	0	350.69	262.49	484.83	322.51	555.42	162.00	593.80
24	E7a_E8a	KnownJunction	0	390.64	249.39	496.19	306.59	422.14	172.38	559.24
25	ER8a	ExonRegion	0	295.18	234.97	409.20	274.87	458.72	148.41	517.61
26	E8a_E9a	KnownJunction	0	237.30	152.90	313.39	201.42	466.47	107.87	403.33
27	E9a_E10a	KnownJunction	0	195.99	186.74	238.27	176.90	431.87	85.14	326.15
28	ER9a	ExonRegion	0	291.78	224.57	367.97	245.28	530.51	131.91	498.37
29	ER10a	ExonRegion	0	326.07	232.19	385.51	244.01	492.01	115.81	561.65
30	E10_Da	NovelBoundary	1	48.58	101.25	15.48	32.97	1.96	2.65	4.18
31	E10a_E11a	KnownJunction	0	261.51	231.06	310.77	276.03	389.39	123.87	550.99
32	I10	Intron	1	20.92	37.91	12.14	16.20	0.98	5.01	4.76
33	I10_AR1	ActiveIntronRegion	1	27.45	49.56	15.56	20.10	1.41	7.05	5.42
34	E11_Aa	NovelBoundary	1	44.58	88.06	29.50	29.53	4.20	13.11	13.64
35	ER11a	ExonRegion	0	212.98	258.04	283.97	270.34	386.45	126.52	471.71
36	E11_Da	NovelBoundary	1	48.97	84.28	19.26	40.42	2.01	18.97	21.31
37	E11a_E12a	KnownJunction	0	271.98	236.36	332.73	244.42	328.41	115.43	494.33
38	I11	Intron	1	64.66	70.01	46.15	32.01	2.10	12.01	15.05
39	I11_AR1	ActiveIntronRegion	1	51.15	59.35	36.65	31.85	1.71	10.44	14.05
40	I11_SR1	SilentIntronRegion	1	118.36	96.54	78.85	41.62	2.82	19.89	24.96
41	I11_SR2	SilentIntronRegion	1	20.09	51.34	20.04	22.54	1.67	5.20	5.73
42	E12_Aa	NovelBoundary	1	42.04	110.92	37.78	33.00	0.00	14.61	9.44
43	ER12a	ExonRegion	0	130.70	121.00	166.68	145.11	189.66	78.40	196.13