Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC027763.9	Gene	0	6.49	8.32	37.18	27.73	11.56	1.04	14.42
2	340858	Transcript	0	5.96	6.91	39.19	30.03	10.58	0.64	13.66
3	ER1a	ExonRegion	0	0.72	1.88	5.00	4.30	2.24	0.00	2.78
4	E1a_E2a	KnownJunction	0	0.87	8.98	6.39	10.19	4.50	0.00	4.20
5	ER2a	ExonRegion	0	2.81	11.25	24.73	20.65	7.27	0.00	12.35
6	E2a_E3a	KnownJunction	0	3.67	2.89	19.60	10.84	5.12	0.00	10.79
7	ER3a	ExonRegion	0	3.76	4.84	22.91	24.07	7.46	0.00	8.81
8	E3_Da	NovelBoundary	0	3.50	3.81	20.20	1.68	0.99	2.73	6.03
9	E3a_E4a	KnownJunction	1	2.40	7.07	23.37	36.22	5.49	0.00	3.44
10	E3a_E6a	NovelJunction	0	0.85	3.02	3.87	9.56	0.00	0.00	1.28
11	I3_SR1	SilentIntronRegion	0	4.08	3.37	11.42	4.47	3.28	1.54	4.97
12	I3_AR1	ActiveIntronRegion	0	5.78	1.69	11.83	2.89	2.50	3.17	3.55
13	I3_SR2	SilentIntronRegion	0	5.43	2.41	13.79	2.94	2.14	2.20	4.57
14	ER4a	ExonRegion	0	3.94	4.54	21.32	21.18	5.66	3.69	7.05
15	E4a_E5a	KnownJunction	0	0.00	0.00	1.64	1.60	0.00	0.00	0.00
16	E4a_E6a	NovelJunction	0	3.04	4.54	28.83	13.09	3.18	1.34	5.93
17	ER5a	ExonRegion	0	0.58	0.00	2.15	1.02	0.54	0.00	0.73
18	E5_Da	NovelBoundary	0	2.57	1.47	12.55	3.98	2.21	11.87	3.54
19	E5a_E6a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	0.00	0.00
20	E6_Aa	NovelBoundary	0	2.82	7.75	9.60	2.52	2.05	6.65	5.07
21	ER6a	ExonRegion	0	5.92	8.14	41.65	32.74	9.54	3.03	12.21
22	E6a_E7a	KnownJunction	0	7.59	9.22	66.94	38.14	12.75	0.00	19.79
23	ER7a	ExonRegion	0	9.54	11.19	68.73	39.75	9.86	1.79	20.52
24	E7a_E8a	KnownJunction	1	6.26	1.63	60.25	26.63	10.65	0.00	10.65
25	E7a_E9a	NovelJunction	1	1.84	1.18	10.91	15.36	0.00	0.00	7.42
26	ER8a	ExonRegion	0	7.43	6.46	56.61	27.08	12.30	0.00	14.88
27	E8a_E9a	KnownJunction	0	6.06	6.96	52.78	22.27	10.56	0.00	16.31
28	I8	Intron	0	3.35	2.23	16.00	4.41	0.50	0.96	4.23
29	I8_SR1	SilentIntronRegion	0	3.64	1.80	15.84	4.93	0.40	0.85	4.08
30	I8_AR1	ActiveIntronRegion	0	2.51	3.60	16.73	2.83	0.82	1.34	4.76
31	E9_Aa	NovelBoundary	0	6.26	1.63	13.67	0.00	2.01	0.00	6.32
32	ER9a	ExonRegion	0	9.39	13.52	57.43	41.46	15.34	1.94	19.11
33	E9a_E10a	KnownJunction	0	7.21	11.01	55.83	53.78	11.99	0.00	16.34
34	ER10a	ExonRegion	0	6.66	8.41	44.08	48.01	13.38	1.38	16.35
35	E10_Da	NovelBoundary	0	1.03	6.83	6.11	0.00	0.00	3.22	9.70
36	E10a_E11a	KnownJunction	1	4.12	6.44	45.47	48.30	16.51	0.00	18.16
37	E11_Aa	NovelBoundary	0	5.97	4.10	3.18	0.00	0.00	1.39	8.17
38	ER11a	ExonRegion	0	7.45	8.84	38.15	40.93	13.21	3.10	13.33
39	E11_Da	NovelBoundary	0	1.97	3.86	12.95	4.58	1.94	1.50	4.93
40	E11a_E12a	KnownJunction	0	8.56	6.09	40.50	35.76	12.08	0.00	10.53
41	E12_Aa	NovelBoundary	0	1.45	4.26	7.95	1.68	0.00	0.00	10.26
42	ER12a	ExonRegion	0	8.62	11.16	58.28	54.08	17.20	1.10	14.72
43	E12a_E13a	KnownJunction	0	6.33	6.12	52.88	39.39	15.88	0.00	16.48
44	E13_Aa	NovelBoundary	0	2.64	5.20	15.62	5.04	2.31	0.00	8.21
45	ER13a	ExonRegion	0	11.24	8.21	57.00	44.60	16.32	0.12	23.86
46	E13_Da	NovelBoundary	0	4.99	3.99	21.28	12.60	1.18	1.13	7.94
47	E13a_E14a	KnownJunction	1	8.08	2.71	47.57	30.15	12.96	1.18	21.34
48	I13	Intron	0	2.51	2.16	16.70	9.08	0.68	0.87	3.84
49	I13_SR1	SilentIntronRegion	0	2.53	2.17	16.76	9.11	0.68	0.88	3.85
50	ER14a	ExonRegion	0	7.58	8.47	47.83	35.45	12.71	0.77	26.40
51	E14a_E15a	KnownJunction	1	8.31	3.60	47.02	56.13	8.81	0.00	27.83
52	ER15a	ExonRegion	0	12.19	9.78	55.86	37.17	18.66	0.53	18.91
53	E15_Da	NovelBoundary	0	4.97	2.63	6.85	9.78	0.00	0.00	3.80
54	E15a_E16a	KnownJunction	0	7.16	11.24	47.47	24.84	18.88	0.00	12.21
55	ER16a	ExonRegion	0	10.31	13.51	44.48	24.28	20.21	1.15	23.43
56	IG32	Intergenic	0	3.54	2.83	15.99	5.24	6.00	1.08	7.17
57	IG32_AR1	ActiveIntergenicRegion	0	11.01	5.09	41.96	6.10	15.64	1.36	13.59
58	IG32_SR1	SilentIntergenicRegion	0	6.64	4.68	25.27	5.28	12.10	0.94	10.31
59	IG32_AR2	ActiveIntergenicRegion	0	6.42	2.54	24.10	5.45	13.50	0.91	10.39
60	IG32_SR2	SilentIntergenicRegion	0	2.12	3.10	14.44	4.11	5.01	1.36	5.97
61	IG32_AR3	ActiveIntergenicRegion	0	6.52	12.36	39.99	15.76	15.00	1.67	23.99
62	IG32_SR3	SilentIntergenicRegion	0	7.15	5.85	36.62	18.48	19.10	0.00	15.37
63	IG32_SR4	SilentIntergenicRegion	0	4.00	3.30	17.90	6.93	9.04	2.49	10.69
64	IG32_AR5	ActiveIntergenicRegion	0	8.54	3.59	35.34	5.96	11.67	4.28	17.34
65	IG32_SR5	SilentIntergenicRegion	0	4.95	4.13	28.14	8.65	9.82	1.95	13.58
66	IG32_AR6	ActiveIntergenicRegion	0	3.25	1.43	16.06	5.17	4.02	2.48	4.89
67	IG32_SR6	SilentIntergenicRegion	0	2.66	1.81	12.48	5.26	2.65	0.21	4.00
68	IG32_AR13	ActiveIntergenicRegion	0	4.72	3.60	30.90	26.38	2.88	1.08	7.14