Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	VAMP2	Gene	0	1.71	8.26	1.52	10.38	0.06	11.95	6.96
2	396308	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.07	0.00
3	404970	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	396305	Transcript	0	3.10	19.05	2.73	17.16	0.51	29.87	20.82
5	IG48_AR1	ActiveIntergenicRegion	0	0.69	0.84	0.20	1.98	9.33	0.29	0.00
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.14	0.00
7	E1_Ac	KnownBoundary	0	10.48	12.85	8.69	27.20	1.04	36.80	9.53
8	ER1b	ExonRegion	0	0.00	0.00	0.00	2.24	0.00	1.23	0.00
9	ER1c	ExonRegion	0	0.00	0.40	0.00	5.10	0.00	2.47	0.00
10	E1_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1d	ExonRegion	0	4.62	19.83	3.17	26.28	0.02	28.75	12.70
13	E1_Db	NovelBoundary	0	14.89	41.51	16.99	56.05	0.88	52.21	8.41
14	E1b_E2a	KnownJunction	1	1.59	18.26	2.30	8.05	0.99	30.98	28.94
15	ER2a	ExonRegion	0	1.65	16.24	3.81	12.00	0.60	19.89	17.13
16	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER3a	ExonRegion	0	0.61	3.16	1.26	4.73	0.00	6.25	11.04
18	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.14
20	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	Ix	Intron	0	40.12	41.95	40.43	31.52	33.49	25.64	12.86
22	Ix_AR1	ActiveIntronRegion	0	40.32	42.15	40.63	31.67	33.66	25.76	12.92
23	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E5_Da	KnownBoundary	0	53.19	63.03	77.07	84.01	2.86	147.16	76.39
25	ER5b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E5_Db	NovelBoundary	0	36.17	62.63	41.11	91.92	11.39	117.92	40.83
27	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	IG47	Intergenic	0	30.67	22.73	18.64	25.42	0.39	17.76	2.86
29	IG47_AR5	ActiveIntergenicRegion	0	11.34	8.25	8.87	6.38	0.18	5.65	0.70
30	IG47_SR4	SilentIntergenicRegion	0	33.95	21.29	21.24	15.67	0.00	10.17	2.04
31	IG47_AR4	ActiveIntergenicRegion	0	34.37	18.90	23.99	15.99	0.44	4.88	4.38
32	IG47_SR3	SilentIntergenicRegion	0	18.19	7.69	16.98	7.73	0.81	0.98	0.81
33	IG47_AR3	ActiveIntergenicRegion	0	19.05	14.42	14.80	12.67	0.30	14.68	2.08
34	IG47_SR2	SilentIntergenicRegion	0	32.73	18.51	30.95	25.19	0.11	26.42	3.12
35	IG47_AR2	ActiveIntergenicRegion	0	79.24	73.88	41.46	81.21	0.84	59.77	5.51
36	IG47_SR1	SilentIntergenicRegion	0	67.88	49.03	37.00	64.46	0.73	43.51	6.44
37	IG47_AR1	ActiveIntergenicRegion	0	17.49	11.61	8.06	9.83	0.00	4.78	1.03