Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	USP43	Gene	0	109.11	136.20	31.81	24.44	17.61	8.76	44.44
2	285199	Transcript	0	102.28	144.16	34.80	21.72	19.37	9.85	47.31
3	IG20_AR1	ActiveIntergenicRegion	0	10.56	2.24	1.77	1.11	2.63	0.00	1.40
4	IG20_AR2	ActiveIntergenicRegion	0	0.48	9.08	0.00	0.95	0.00	0.00	0.00
5	ER1a	ExonRegion	0	23.53	53.24	5.84	8.44	1.95	3.50	7.36
6	E1a_E2a	KnownJunction	1	29.91	69.96	12.44	3.36	0.00	4.98	10.66
7	ER2a	ExonRegion	0	99.66	149.89	36.59	24.13	13.88	9.65	40.78
8	E2a_E3a	KnownJunction	0	80.03	171.45	38.80	32.56	11.78	6.99	47.16
9	E2a_E4a	NovelJunction	0	14.44	27.43	3.62	6.20	1.01	0.00	1.32
10	E2a_E6a	NovelJunction	0	0.87	13.03	0.00	0.00	0.00	0.00	0.00
11	I2	Intron	0	23.51	4.73	2.58	0.93	0.60	0.06	2.95
12	I2_SR1	SilentIntronRegion	0	23.54	4.73	2.58	0.93	0.60	0.06	2.95
13	ER3a	ExonRegion	0	139.17	190.87	46.63	33.08	20.95	6.57	68.55
14	E3a_E4a	KnownJunction	0	156.28	174.81	62.45	22.97	24.48	7.91	82.84
15	E3a_E5a	NovelJunction	1	2.77	17.81	5.04	0.00	8.30	0.00	4.16
16	I3	Intron	1	22.26	2.54	2.30	0.33	0.23	0.06	1.99
17	I3_SR1	SilentIntronRegion	0	24.46	3.26	2.72	0.14	0.29	0.09	2.30
18	E4_Aa	NovelBoundary	1	29.66	6.70	4.63	0.00	0.00	0.00	2.78
19	ER4a	ExonRegion	0	146.90	199.50	60.52	26.88	18.52	7.80	80.40
20	E4_Da	NovelBoundary	1	48.70	1.63	20.41	0.00	1.01	0.00	0.82
21	E4a_E5a	KnownJunction	0	134.94	133.56	50.54	16.69	9.84	8.76	43.14
22	ER5a	ExonRegion	0	145.42	190.36	51.49	25.80	22.64	11.02	66.05
23	E5_Da	NovelBoundary	1	30.69	5.75	2.23	0.00	0.00	0.00	2.36
24	E5a_E6a	KnownJunction	0	142.68	183.48	46.62	24.98	26.53	9.70	51.23
25	ER6a	ExonRegion	0	178.86	194.45	54.67	30.33	29.40	17.35	68.73
26	E6_Da	NovelBoundary	1	37.00	9.80	1.98	1.08	0.00	0.00	2.91
27	E6a_E7a	KnownJunction	0	107.22	156.08	44.29	31.51	23.44	14.07	53.56
28	E6a_E8a	NovelJunction	1	24.53	10.46	1.35	1.25	0.00	0.00	0.79
29	I6	Intron	1	26.67	2.70	2.64	0.25	0.57	0.00	3.13
30	I6_SR1	SilentIntronRegion	0	26.72	2.71	2.65	0.25	0.57	0.00	3.14
31	ER7a	ExonRegion	0	99.21	128.91	35.35	32.44	21.38	13.34	50.22
32	E7_Da	NovelBoundary	0	30.86	17.52	3.55	1.41	0.00	0.00	6.66
33	E7a_E8a	KnownJunction	0	80.18	112.73	34.50	17.61	22.96	13.80	53.44
34	I7	Intron	1	42.66	10.35	3.85	1.41	1.74	0.46	4.73
35	I7_SR1	SilentIntronRegion	1	42.70	10.36	3.85	1.42	1.74	0.46	4.73
36	E8_Aa	NovelBoundary	1	67.83	11.64	4.35	0.00	3.07	2.04	7.75
37	ER8a	ExonRegion	0	130.09	151.48	38.15	29.67	22.55	12.44	43.87
38	E8a_E9a	KnownJunction	0	110.97	142.44	33.94	15.66	27.25	15.12	32.35
39	ER9a	ExonRegion	0	114.27	147.41	29.32	24.12	13.95	4.00	43.40
40	E9a_E10a	KnownJunction	1	70.11	116.67	23.83	11.24	24.85	1.10	31.59
41	E9a_E12a	NovelJunction	1	5.22	10.22	2.20	3.36	0.00	0.00	2.34
42	I9	Intron	1	37.86	6.32	4.19	0.91	0.75	0.25	4.52
43	I9_SR1	SilentIntronRegion	0	37.88	6.32	4.19	0.91	0.75	0.25	4.52
44	ER10a	ExonRegion	0	66.15	122.08	20.20	11.17	20.52	3.58	32.87
45	E10_Da	NovelBoundary	1	35.95	4.70	2.27	1.57	0.00	1.10	3.71
46	E10a_E11a	KnownJunction	1	54.86	114.02	7.85	13.38	16.14	9.19	34.12
47	I10	Intron	0	23.42	6.62	2.58	0.38	0.41	0.37	3.26
48	I10_SR1	SilentIntronRegion	0	23.60	6.69	2.60	0.38	0.42	0.38	3.29
49	ER11a	ExonRegion	1	63.24	141.12	17.39	12.45	15.73	6.49	54.72
50	E11a_E12a	KnownJunction	0	80.08	151.14	35.31	17.23	19.73	7.77	49.30
51	E12_Aa	NovelBoundary	0	31.44	7.25	3.33	0.00	0.00	0.00	9.72
52	ER12a	ExonRegion	0	132.21	167.43	34.44	25.48	29.98	8.15	67.92
53	E12a_E13a	KnownJunction	1	48.60	87.17	20.62	5.88	22.87	9.81	43.51
54	I12	Intron	0	33.00	6.60	4.06	0.98	0.74	0.19	3.74
55	I12_SR1	SilentIntronRegion	0	33.02	6.60	4.06	0.98	0.74	0.19	3.74
56	E13_Aa	NovelBoundary	1	46.20	20.60	6.58	7.61	1.06	0.00	4.36
57	ER13a	ExonRegion	0	109.70	147.57	36.90	21.41	21.24	13.11	54.74
58	E13a_E14a	KnownJunction	0	92.48	141.05	37.89	19.99	25.93	17.39	35.96
59	ER14a	ExonRegion	0	86.40	156.33	26.57	28.56	16.11	15.46	47.73
60	E14a_E15a	KnownJunction	0	110.67	153.11	31.17	32.92	19.20	17.93	35.01
61	ER15a	ExonRegion	0	132.27	132.38	34.76	29.97	17.93	8.70	40.71
62	IG21_AR1	ActiveIntergenicRegion	0	79.43	41.46	20.00	8.98	8.84	3.78	15.52