Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SGSM2	Gene	0	68.80	142.64	32.84	42.36	65.78	51.09	34.24
2	268989	Transcript	0	101.40	207.34	49.54	62.33	99.66	73.28	49.76
3	397207	Transcript	0	14.71	24.98	7.53	10.29	12.90	8.38	9.51
4	ER1a	ExonRegion	0	10.85	35.79	4.84	12.30	6.04	14.03	6.81
5	E1a_E2a	KnownJunction	0	27.22	106.92	17.16	33.08	29.25	49.71	24.26
6	E1a_E3a	NovelJunction	0	0.82	15.71	0.00	7.42	2.21	13.45	0.00
7	ER2a	ExonRegion	0	33.32	139.10	21.66	49.75	31.44	40.80	24.59
8	E2a_E3a	KnownJunction	0	52.92	144.60	24.24	34.57	25.82	39.18	22.54
9	ER3a	ExonRegion	0	48.14	164.24	23.47	53.33	38.64	53.79	28.34
10	E3a_E4a	KnownJunction	0	66.53	144.81	37.52	51.09	66.67	48.08	26.38
11	E4_Aa	NovelBoundary	1	34.61	9.51	12.19	0.00	2.74	3.00	3.90
12	ER4a	ExonRegion	0	77.72	205.10	39.63	62.70	66.78	69.92	34.55
13	E4_Da	NovelBoundary	0	19.43	15.87	5.33	0.00	0.00	3.86	3.31
14	E4a_E5a	KnownJunction	0	95.30	207.44	41.00	56.92	74.99	60.67	31.03
15	E5_Aa	NovelBoundary	1	40.97	27.32	20.58	11.38	2.03	2.57	6.15
16	ER5a	ExonRegion	0	62.94	171.65	30.46	46.63	62.31	55.19	25.34
17	E5_Da	NovelBoundary	0	32.23	92.00	12.01	16.25	9.34	23.96	14.75
18	E5a_E6a	KnownJunction	0	27.44	154.08	12.10	27.44	41.01	57.11	22.07
19	E6_Aa	NovelBoundary	0	38.55	90.93	19.90	25.63	19.96	25.78	17.21
20	ER6a	ExonRegion	0	55.10	173.27	25.81	49.86	70.41	55.18	28.43
21	E6a_E7a	KnownJunction	0	44.73	169.61	29.42	56.27	67.36	60.89	20.98
22	ER7a	ExonRegion	0	50.16	176.85	26.04	56.97	54.81	59.16	29.17
23	E7a_E8b	KnownJunction	0	60.80	177.12	32.66	41.34	62.68	68.45	33.87
24	ER8a	ExonRegion	0	5.77	13.18	1.34	1.76	1.75	4.71	5.10
25	E8_Ab	KnownBoundary	0	9.40	23.57	3.55	7.88	3.30	8.09	6.39
26	ER8b	ExonRegion	0	88.09	217.92	53.68	61.99	70.15	92.53	38.54
27	E8_Da	KnownBoundary	0	5.01	6.33	2.17	4.09	1.11	3.89	4.47
28	E8a_E8c	KnownJunction	0	86.52	223.18	54.95	61.47	82.37	98.97	44.24
29	ER8c	ExonRegion	0	7.31	17.84	2.39	2.87	3.62	2.51	8.31
30	E8_Ac	KnownBoundary	1	5.22	30.47	4.70	1.38	7.54	1.66	11.87
31	ER8d	ExonRegion	0	88.67	261.05	54.82	54.01	79.50	105.29	53.09
32	E8_Db	KnownBoundary	1	7.48	13.95	1.61	4.96	1.06	2.65	11.82
33	E8b_E8d	KnownJunction	0	83.15	247.58	40.65	52.83	64.73	100.66	29.75
34	ER8e	ExonRegion	0	6.12	9.11	2.60	1.89	1.02	2.80	9.07
35	E8_Ad	KnownBoundary	0	6.61	1.63	2.31	0.00	0.00	1.02	5.92
36	ER8f	ExonRegion	0	83.45	233.66	41.16	61.64	89.73	97.01	43.09
37	E8c_E9a	KnownJunction	0	88.86	221.31	51.91	69.71	168.33	96.51	38.55
38	ER9a	ExonRegion	0	116.29	234.46	58.66	70.02	115.39	85.53	59.10
39	E9a_E10a	KnownJunction	1	33.58	96.44	10.03	6.45	27.55	13.29	27.30
40	E9a_E11a	KnownJunction	0	23.00	63.42	23.67	40.64	55.86	27.95	22.24
41	E10_Aa	NovelBoundary	0	8.48	42.61	2.07	17.12	3.16	16.03	3.86
42	ER10a	ExonRegion	0	64.01	145.08	24.18	26.45	13.97	31.42	35.82
43	E10a_E11a	KnownJunction	1	42.78	172.42	14.60	21.35	9.54	25.67	16.34
44	ER11a	ExonRegion	0	45.62	198.54	29.01	52.57	65.02	47.00	30.23
45	E11a_E12a	KnownJunction	0	63.94	128.99	30.01	37.55	56.00	39.23	31.57
46	ER12a	ExonRegion	0	43.52	126.68	26.31	36.95	55.89	39.76	29.14
47	E12_Da	KnownBoundary	0	2.50	18.26	4.04	5.91	4.13	3.75	8.96
48	E12a_E12b	KnownJunction	0	44.18	127.13	30.15	32.62	38.06	32.62	28.08
49	ER12b	ExonRegion	0	4.00	15.88	2.65	10.49	3.33	3.37	3.43
50	E12_Ab	KnownBoundary	0	5.89	19.26	3.09	10.29	3.46	5.76	2.62
51	ER12c	ExonRegion	0	69.39	147.99	36.88	39.80	56.73	52.72	29.78
52	E12_Db	KnownBoundary	1	37.55	21.81	10.99	4.28	15.19	6.54	4.97
53	E12b_E12c	KnownJunction	0	65.07	152.06	42.28	40.99	90.99	51.48	42.16
54	ER12d	ExonRegion	0	24.87	29.04	9.66	8.13	11.89	12.66	9.24
55	E12_Ac	KnownBoundary	0	19.01	36.39	10.13	9.86	18.00	17.29	10.42
56	ER12e	ExonRegion	0	85.94	218.85	51.88	52.28	99.21	60.35	50.75
57	E12_Dc	KnownBoundary	0	9.95	16.73	0.00	5.36	4.38	2.41	6.98
58	E12c_E12d	KnownJunction	0	81.36	189.39	47.42	54.89	70.82	70.86	43.09
59	ER12f	ExonRegion	0	9.97	14.77	3.79	7.97	6.75	2.68	6.88
60	E12_Ad	KnownBoundary	1	8.65	11.27	5.23	1.25	12.75	7.34	12.51
61	ER12g	ExonRegion	0	79.95	228.19	44.78	75.32	93.94	67.45	54.09
62	E12_Dd	KnownBoundary	0	13.64	36.52	4.67	5.23	8.85	8.79	8.05
63	E12d_E13a	KnownJunction	0	96.23	190.47	49.68	73.63	101.57	73.40	41.78
64	ER12h	ExonRegion	0	36.62	36.59	14.11	8.53	19.01	10.33	11.80
65	E12_De	NovelBoundary	0	30.08	19.60	9.53	7.12	11.32	3.62	7.24
66	I12	Intron	0	32.61	39.57	17.48	7.05	24.17	10.40	16.40
67	I12_AR1	ActiveIntronRegion	0	32.64	39.61	17.50	7.06	24.20	10.41	16.42
68	ER13a	ExonRegion	0	80.63	203.65	41.84	70.19	83.80	67.48	42.18
69	E13a_E14a	KnownJunction	0	105.25	259.93	60.46	92.03	123.89	93.93	62.84
70	I13	Intron	1	19.51	12.71	2.96	3.98	5.51	7.13	5.49
71	I13_SR1	SilentIntronRegion	1	20.61	13.41	3.14	4.17	5.79	7.56	5.79
72	ER14a	ExonRegion	0	140.33	288.58	69.88	113.30	161.93	115.75	80.95
73	E14a_E15a	KnownJunction	0	142.57	290.93	64.12	82.41	190.67	101.12	85.40
74	E15_Aa	NovelBoundary	1	8.96	11.01	3.62	6.39	4.40	6.11	9.96
75	ER15a	ExonRegion	0	165.62	311.52	83.74	97.53	163.22	121.96	102.81
76	E15a_E16a	KnownJunction	0	139.18	313.29	70.56	107.42	178.20	145.28	79.61
77	ER16a	ExonRegion	0	172.90	311.89	87.38	92.12	217.08	119.98	91.06
78	E16a_E17a	KnownJunction	0	285.95	373.90	135.91	133.26	224.03	146.14	162.92
79	ER17a	ExonRegion	0	286.66	357.03	137.54	113.69	295.35	138.39	130.66
80	E17a_E18a	KnownJunction	0	290.22	318.20	128.92	114.97	183.62	104.89	76.47
81	ER18a	ExonRegion	0	233.72	284.62	104.01	95.98	258.15	100.17	102.26
82	E18_Da	NovelBoundary	0	19.61	5.91	9.48	1.08	6.80	11.47	7.87
83	E18a_E19a	KnownJunction	0	191.85	217.29	70.83	64.15	206.05	65.58	57.00
84	E19_Aa	NovelBoundary	1	4.27	18.05	5.33	6.77	5.14	5.52	12.08
85	ER19a	ExonRegion	0	105.60	219.23	48.27	63.77	103.79	86.70	50.25
86	IG41_SR1	SilentIntergenicRegion	0	5.99	4.71	1.72	1.25	1.17	1.21	7.74