Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	USP6	Gene	0	3.25	1.97	10.51	5.97	2.55	2.29	2.11
2	357482	Transcript	0	0.00	0.00	0.00	0.00	0.65	0.59	0.00
3	332776	Transcript	0	0.00	0.00	7.87	5.50	1.13	0.00	0.00
4	304328	Transcript	0	0	0	0	0	0	0	0
5	250066	Transcript	0	7.81	6.40	5.77	3.69	4.50	3.56	9.03
6	396805	Transcript	0	4.14	3.40	2.65	2.37	1.91	1.96	2.85
7	250067	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	0.19	0.30	6.16	4.21	0.68	0.00	0.34
9	E1a_E2a	KnownJunction	0	0.00	0.00	14.46	7.42	0.00	0.00	0.00
10	ER2a	ExonRegion	0	0.00	1.01	9.68	5.82	1.36	0.00	0.00
11	E2a_E3a	KnownJunction	0	0.00	0.00	9.77	4.80	0.00	0.00	0.00
12	ER3a	ExonRegion	0	0.60	0.57	15.53	10.28	1.02	0.58	0.00
13	E3a_E4a	KnownJunction	0	0.00	0.00	10.29	10.24	0.00	0.00	0.00
14	ER4a	ExonRegion	0	1.08	0.97	5.81	5.72	0.43	0.00	0.27
15	E4a_E5a	KnownJunction	0	0.00	0.00	3.64	1.65	0.00	0.00	0.00
16	ER5a	ExonRegion	0	0.65	0.05	11.70	8.34	1.63	0.26	0.28
17	E5_Da	NovelBoundary	0	208.47	231.64	42.65	16.20	26.26	31.68	54.19
18	E5a_E6a	KnownJunction	0	2.47	1.63	11.47	4.98	0.00	0.00	0.00
19	E6_Aa	NovelBoundary	0	813.48	419.00	519.83	367.92	664.73	355.93	381.10
20	ER6a	ExonRegion	0	65.19	30.33	38.31	9.76	76.70	16.22	13.53
21	E6_Da	NovelBoundary	0	144.05	127.36	80.19	97.23	89.74	92.75	175.19
22	E6a_E7a	KnownJunction	0	0.00	0.00	2.67	1.03	0.00	0.00	0.00
23	E7_Aa	NovelBoundary	0	8.24	1.21	8.18	10.35	0.99	0.00	9.43
24	ER7a	ExonRegion	0	12.78	7.29	12.04	1.24	4.51	0.69	16.29
25	E7_Da	NovelBoundary	0	7.99	22.88	7.53	10.29	5.05	1.26	21.70
26	E7a_E8c	KnownJunction	0	0.00	0.00	1.44	1.30	0.00	0.00	0.00
27	ER8a	ExonRegion	0	12.10	8.86	3.58	2.88	5.15	2.40	12.26
28	E8_Ab	KnownBoundary	0	0.78	0.00	1.78	0.00	0.00	0.00	0.00
29	ER8b	ExonRegion	0	8.26	5.05	6.67	2.23	4.49	1.33	10.14
30	E8_Da	KnownBoundary	0	0.00	0.00	0.00	1.60	0.00	0.00	0.00
31	E8a_E8d	KnownJunction	0	0.00	0.00	2.66	0.00	0.00	0.00	0.00
32	E8_Ac	KnownBoundary	0	1.64	3.89	2.80	1.65	2.33	1.42	7.41
33	ER8c	ExonRegion	0	15.39	12.76	6.95	4.95	4.75	3.31	18.39
34	ER8d	ExonRegion	0	1.52	1.11	3.80	4.17	2.15	0.18	1.83
35	E8_Db	KnownBoundary	0	19.31	16.16	5.45	4.17	2.12	2.73	24.64
36	E8b_E8d	KnownJunction	0	0.00	0.00	2.36	0.00	0.00	0.00	0.00
37	ER8e	ExonRegion	0	1.17	0.43	3.11	0.72	0.65	0.80	1.41
38	E8_Ad	KnownBoundary	0	1.00	0.00	3.82	0.00	1.01	0.00	2.05
39	ER8f	ExonRegion	0	0.24	0.52	7.34	3.72	0.52	0.00	0.00
40	E8c_E9a	KnownJunction	0	0.85	1.08	8.97	2.90	0.97	0.00	0.00
41	ER9a	ExonRegion	0	1.11	1.20	10.85	6.29	1.33	0.00	0.00
42	E9a_E10a	KnownJunction	0	0.97	1.18	13.54	5.61	1.18	0.00	0.00
43	ER10a	ExonRegion	0	0.66	0.32	11.87	6.23	0.83	0.00	0.01
44	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	E10a_E11b	KnownJunction	0	1.03	0.00	6.71	3.98	0.00	0.00	0.00
46	E11_Aa	NovelBoundary	0	8.70	11.48	2.16	2.36	0.95	4.34	7.62
47	ER11a	ExonRegion	0	13.38	11.49	3.94	7.19	7.27	5.15	9.55
48	E11_Ab	KnownBoundary	0	0.00	1.39	0.00	1.44	0.00	0.00	0.00
49	ER11b	ExonRegion	0	7.55	1.21	7.90	9.05	7.23	1.23	1.35
50	E11a_E12a	KnownJunction	0	0.75	0.00	7.95	5.50	1.18	0.00	0.00
51	ER12a	ExonRegion	0	1.31	0.25	11.37	7.33	1.53	0.26	0.17
52	E12a_E13a	KnownJunction	0	0.00	0.00	16.89	4.82	0.97	0.00	0.00
53	ER13a	ExonRegion	0	3.12	0.00	16.24	7.47	4.22	0.00	0.72
54	E13a_E14a	KnownJunction	0	0.78	0.00	11.98	9.13	0.92	1.05	0.00
55	ER14a	ExonRegion	0	1.18	0.00	16.20	8.89	3.58	0.00	0.67
56	E14_Da	KnownBoundary	0	0.00	0.00	0.53	0.00	0.00	0.00	0.00
57	E14a_E15a	KnownJunction	0	0.98	0.00	8.35	12.06	2.35	0.00	0.00
58	ER14b	ExonRegion	0	3.19	2.10	4.01	2.27	0.36	2.71	1.85
59	ER15a	ExonRegion	0	1.40	0.00	11.97	6.72	1.19	0.00	0.00
60	E15a_E16a	KnownJunction	0	1.03	0.00	9.13	1.57	1.18	0.00	0.00
61	ER16a	ExonRegion	0	0.22	0.75	7.42	11.17	1.19	0.00	0.00
62	E16a_E17a	KnownJunction	0	0.00	0.00	8.95	5.07	3.30	0.00	0.00
63	ER17a	ExonRegion	0	0.61	0.00	12.27	13.28	1.35	0.00	0.00
64	E17a_E18a	KnownJunction	0	0.00	0.00	6.24	6.07	0.00	0.00	0.00
65	ER18a	ExonRegion	0	0.00	0.00	5.97	5.16	0.53	0.00	0.00
66	E18a_E19a	KnownJunction	0	0.00	0.00	3.91	6.45	0.90	0.00	0.00
67	ER19a	ExonRegion	0	0.00	0.00	11.17	9.60	0.28	0.00	0.00
68	E19a_E20a	KnownJunction	0	0.00	0.00	14.13	7.26	1.18	0.00	0.00
69	ER20a	ExonRegion	0	0.38	0.00	12.24	9.29	0.72	0.00	0.00
70	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.18	0.00
71	E20a_E23a	KnownJunction	0	0.00	0.00	7.67	11.62	0.00	0.00	0.00
72	E21_Aa	NovelBoundary	0	0.98	5.73	0.00	3.20	1.94	1.45	8.40
73	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	1.30	0.00	0.00
74	E21_Da	NovelBoundary	0	3.35	3.10	1.44	3.09	3.37	1.58	12.68
75	ER22a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	E22_Da	NovelBoundary	0	1.50	5.83	3.16	5.93	0.00	6.00	11.95
77	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	ER23a	ExonRegion	0	0.13	0.00	5.81	6.03	0.20	0.00	0.00
79	E23_Da	NovelBoundary	0	0.00	0.00	0.89	8.05	0.00	0.00	0.00
80	E23a_E24a	KnownJunction	0	0.00	0.00	6.01	4.25	0.00	0.00	0.00
81	ER24a	ExonRegion	0	0.00	0.00	9.55	3.13	0.00	0.00	0.00
82	E24a_E25a	KnownJunction	0	1.03	0.00	11.34	4.44	6.69	1.18	0.00
83	ER25a	ExonRegion	0	0.00	0.00	10.23	7.97	0.16	0.54	0.00
84	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
85	ER26a	ExonRegion	0	0.00	0.00	9.46	7.85	0.91	0.40	0.00
86	E26a_E27a	KnownJunction	0	0.00	0.00	9.43	13.27	0.00	1.37	0.00
87	ER27a	ExonRegion	0	0.00	0.00	15.65	6.41	0.89	0.39	0.00
88	E27a_E28a	KnownJunction	0	0.00	0.00	8.23	1.68	0.95	0.00	0.00
89	ER28a	ExonRegion	0	0.00	0.00	16.72	4.55	0.28	0.00	0.00
90	E28a_E29a	KnownJunction	0	0.00	0.00	15.49	4.71	0.00	0.00	0.00
91	ER29a	ExonRegion	0	0.00	0.00	16.08	6.11	0.38	2.47	0.00
92	E29a_E30a	KnownJunction	0	0.00	0.00	8.02	0.00	1.01	0.00	0.00
93	E29a_E31a	KnownJunction	0	0.00	0.00	7.87	5.50	1.13	0.00	0.00
94	ER30a	ExonRegion	0	0.00	0.00	7.90	0.81	0.09	0.00	0.00
95	E30a_E31a	KnownJunction	0	0.00	0.00	10.55	0.00	0.00	0.00	0.00
96	ER31a	ExonRegion	0	0.00	0.00	22.57	7.11	0.53	0.43	0.00
97	E31a_E32a	KnownJunction	0	0.00	0.00	24.30	1.68	1.13	0.00	1.61
98	ER32a	ExonRegion	0	0.00	0.00	17.91	5.88	0.59	0.00	0.00
99	E32a_E33a	KnownJunction	0	0.00	0.00	11.97	5.36	0.00	0.00	0.00
100	ER33a	ExonRegion	0	0.00	0.28	8.67	4.21	0.00	0.00	0.00
101	E33a_E34a	KnownJunction	0	0.00	1.34	8.44	1.16	0.00	0.00	0.00
102	ER34a	ExonRegion	0	0.48	0.63	10.41	2.39	0.00	0.00	0.00
103	E34a_E35a	KnownJunction	0	0.00	0.00	2.97	1.16	0.00	0.00	0.00
104	ER35a	ExonRegion	0	0.30	1.40	10.63	4.75	0.43	0.00	0.08
105	E35a_E36a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
106	ER36a	ExonRegion	0	0.01	0.00	13.36	9.32	0.54	0.28	0.12
107	E36a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
108	ER37a	ExonRegion	0	1.58	0.42	9.74	4.19	0.78	2.47	1.38
109	E37a_E38a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
110	ER38a	ExonRegion	0	0.42	0.00	13.45	4.83	0.83	0.41	0.12
111	E38a_E39a	KnownJunction	0	0.00	0.00	17.76	7.96	0.00	0.00	0.00
112	ER39a	ExonRegion	0	4.77	2.92	16.27	9.46	3.67	7.14	2.98
113	E39_Da	KnownBoundary	0	16.66	10.80	24.73	20.86	11.96	23.45	16.47
114	ER39b	ExonRegion	0	2.58	3.56	9.44	6.21	7.45	7.75	4.05