Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RPAIN	Gene	0	64.38	136.42	78.85	102.99	153.60	94.55	66.38
2	381209	Transcript	0	38.04	92.44	44.47	51.08	107.22	54.09	54.59
3	396785	Transcript	0	0.15	0.00	0.00	0.75	0.00	0.00	0.00
4	327154	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	381208	Transcript	1	7.41	19.65	20.26	20.43	34.39	18.65	18.17
6	405578	Transcript	0	8.36	21.91	14.14	33.40	1.11	28.03	5.46
7	ER1a	ExonRegion	1	12.28	59.55	5.47	6.55	8.17	14.37	4.03
8	E1_Ab	KnownBoundary	0	50.20	74.22	38.73	46.84	143.62	35.75	47.45
9	ER1b	ExonRegion	0	107.16	210.35	94.10	212.98	270.92	131.51	98.56
10	E1a_E2a	KnownJunction	0	24.67	94.21	22.50	48.55	44.19	43.55	16.21
11	ER2a	ExonRegion	0	107.34	246.11	134.28	239.77	253.50	169.45	118.04
12	E2a_E3a	KnownJunction	0	87.67	246.27	132.45	190.53	684.51	159.19	130.99
13	ER3a	ExonRegion	0	100.39	243.05	115.00	163.11	449.41	157.31	149.74
14	E3a_E5a	KnownJunction	0	102.01	215.74	119.52	118.33	322.76	132.93	153.82
15	E3a_E6a	NovelJunction	1	8.51	7.09	9.51	20.67	46.24	2.89	22.63
16	E3a_E8a	NovelJunction	0	3.22	11.98	7.37	26.58	1.08	24.58	1.20
17	E3a_E9a	NovelJunction	0	11.20	49.23	21.91	32.67	20.68	42.29	25.02
18	ER4a	ExonRegion	0	0.15	0.00	0.00	0.75	0.00	0.00	0.00
19	I4	Intron	1	31.56	7.76	11.68	1.82	73.78	2.14	4.30
20	I4_SR1	SilentIntronRegion	1	31.68	7.79	11.72	1.82	74.07	2.15	4.32
21	Ix	Intron	0	8.97	16.69	6.26	2.82	38.23	3.60	6.53
22	Ix_AR1	ActiveIntronRegion	0	9.00	16.73	6.28	2.83	38.33	3.61	6.54
23	E5_Aa	NovelBoundary	1	34.10	26.53	15.81	6.58	32.20	4.72	11.82
24	ER5a	ExonRegion	0	106.67	240.57	141.19	130.98	218.48	164.44	142.25
25	E5_Da	NovelBoundary	1	48.47	71.09	26.74	21.21	83.27	10.85	11.44
26	E5a_E6a	KnownJunction	0	60.00	131.62	83.48	77.02	137.69	87.39	109.09
27	E5a_E8a	KnownJunction	0	8.36	21.91	14.14	33.40	1.11	28.03	5.46
28	E5a_E9a	NovelJunction	0	5.54	28.32	13.12	16.90	7.22	29.21	8.89
29	Ix	Intron	1	32.80	33.05	19.93	9.87	90.50	4.87	4.99
30	Ix_AR1	ActiveIntronRegion	0	33.18	33.41	20.16	9.98	91.57	4.94	5.04
31	E6_Aa	NovelBoundary	0	17.51	44.24	18.21	14.30	53.67	16.72	9.65
32	ER6a	ExonRegion	0	67.90	144.53	96.83	100.42	251.60	105.44	124.31
33	E6_Da	NovelBoundary	1	25.82	42.82	18.44	7.94	71.49	2.44	7.15
34	E6a_E8a	KnownJunction	0	63.79	125.34	83.46	95.60	206.28	93.80	105.16
35	E6a_E9a	KnownJunction	1	7.41	19.65	20.26	20.43	34.39	18.65	18.17
36	Ix_AR1	ActiveIntronRegion	0	16.33	2.18	4.03	2.23	31.60	0.01	1.47
37	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	Ix_AR2	ActiveIntronRegion	0	17.68	33.95	11.62	5.68	33.83	1.85	6.81
39	ER8a	ExonRegion	0	120.82	168.97	137.79	168.90	312.88	144.99	125.68
40	E8_Da	NovelBoundary	1	31.29	17.23	13.41	4.06	44.03	6.43	4.30
41	E8a_E9a	KnownJunction	0	53.36	112.99	77.60	95.41	157.52	128.50	72.93
42	Ix	Intron	0	16.00	20.99	11.20	5.81	40.01	2.95	4.88
43	Ix_AR1	ActiveIntronRegion	0	16.01	21.00	11.20	5.81	40.04	2.95	4.88
44	I8	Intron	1	14.08	30.57	9.02	7.61	35.83	7.87	3.92
45	I8_AR1	ActiveIntronRegion	1	14.12	30.65	9.05	7.63	35.91	7.89	3.93
46	ER9a	ExonRegion	0	75.11	124.55	116.40	120.31	157.85	125.74	61.35