Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MYH3	Gene	0	7.00	7.55	23.14	20.02	3.05	13.52	2.33
2	226209	Transcript	0	7.07	7.36	22.65	19.10	2.91	10.69	2.17
3	IG32	Intergenic	0	4.03	6.78	14.48	10.31	27.96	8.82	8.01
4	IG32_AR8	ActiveIntergenicRegion	0	2.10	5.80	12.02	9.41	34.11	11.70	7.84
5	IG32_SR8	SilentIntergenicRegion	0	6.91	3.83	22.05	5.25	32.09	9.52	7.46
6	IG32_AR7	ActiveIntergenicRegion	0	10.12	10.43	42.65	21.22	70.39	13.86	22.26
7	IG32_SR7	SilentIntergenicRegion	0	11.71	10.80	33.93	19.67	71.13	9.32	15.20
8	IG32_AR6	ActiveIntergenicRegion	0	12.15	13.19	37.20	18.92	67.96	16.43	20.01
9	IG32_AR5	ActiveIntergenicRegion	0	10.10	8.92	30.59	18.25	57.19	18.43	12.63
10	IG32_SR5	SilentIntergenicRegion	0	11.57	6.44	29.52	18.34	63.89	14.86	15.55
11	IG32_AR4	ActiveIntergenicRegion	0	6.44	22.37	26.82	30.02	79.06	18.67	22.90
12	IG32_SR4	SilentIntergenicRegion	0	19.96	15.93	62.65	26.94	100.20	25.86	19.55
13	IG32_AR3	ActiveIntergenicRegion	0	8.87	19.27	33.96	34.83	88.99	21.92	27.18
14	ER1a	ExonRegion	0	1.13	5.10	4.16	6.79	2.70	1.99	0.25
15	E1a_E2a	KnownJunction	0	2.49	7.91	12.67	14.33	6.11	6.00	1.81
16	ER2a	ExonRegion	0	3.68	6.14	20.01	17.47	4.08	12.55	1.72
17	E2_Da	NovelBoundary	1	0.00	0.00	0.00	0.00	0.00	8.74	0.00
18	E2a_E3a	KnownJunction	0	5.14	5.18	25.08	18.21	6.99	9.19	0.89
19	ER3a	ExonRegion	0	5.13	4.05	14.84	15.40	4.68	7.77	0.57
20	E3a_E4a	KnownJunction	0	1.70	2.73	6.19	10.00	1.18	3.32	0.00
21	ER4a	ExonRegion	0	3.23	1.28	9.71	7.56	0.77	3.00	1.27
22	E4a_E5a	KnownJunction	0	3.99	1.37	13.48	8.86	1.08	4.50	2.46
23	E5a_E6a	KnownJunction	1	1.75	1.44	7.82	10.84	2.05	0.00	0.76
24	ER5a	ExonRegion	1	4.25	1.04	12.02	11.04	1.59	3.28	2.36
25	ER6a	ExonRegion	0	5.41	1.76	19.41	10.85	1.17	3.67	3.15
26	E6a_E7a	KnownJunction	0	6.26	2.84	18.22	13.00	1.98	5.52	0.59
27	ER7a	ExonRegion	0	6.49	4.78	20.60	10.58	1.43	3.05	1.47
28	E7a_E8a	KnownJunction	0	6.21	7.07	16.57	13.09	1.08	4.98	2.22
29	ER8a	ExonRegion	0	8.08	4.27	14.60	9.45	0.85	2.36	1.17
30	E8a_E9a	KnownJunction	1	8.56	4.57	12.95	11.73	0.00	0.00	0.00
31	ER9a	ExonRegion	1	4.92	6.05	14.46	15.68	1.45	2.23	0.89
32	E9a_E10a	KnownJunction	1	4.29	4.07	15.18	16.80	1.18	3.78	2.58
33	ER10a	ExonRegion	1	4.50	4.30	14.53	15.44	0.59	2.77	1.73
34	E10a_E11a	KnownJunction	0	3.96	3.91	15.16	14.74	1.80	4.72	1.62
35	ER11a	ExonRegion	1	4.55	5.92	14.21	12.39	1.86	2.61	2.04
36	E11a_E12a	KnownJunction	0	5.41	9.12	21.17	11.05	0.99	2.28	4.33
37	ER12a	ExonRegion	0	5.10	7.87	22.55	15.09	1.52	7.49	2.64
38	E12a_E13a	KnownJunction	1	11.78	4.39	33.05	14.95	2.17	2.22	1.12
39	ER13a	ExonRegion	0	8.17	7.95	30.14	24.37	3.07	8.52	3.49
40	E13a_E14a	KnownJunction	0	10.31	13.85	34.98	18.42	3.16	7.58	1.83
41	ER14a	ExonRegion	0	6.95	6.98	24.86	22.28	3.13	8.47	2.09
42	E14_Da	NovelBoundary	1	0.00	0.00	0.73	0.00	0.00	8.50	1.55
43	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E15_Aa	NovelBoundary	1	0.00	0.00	0.00	1.41	0.99	10.85	0.00
45	ER15a	ExonRegion	0	3.78	10.66	19.05	13.72	3.60	17.75	2.72
46	E15_Da	NovelBoundary	1	0.00	0.00	0.00	4.39	0.00	14.82	1.56
47	E15a_E16a	KnownJunction	0	6.54	7.46	11.98	6.37	1.15	5.95	1.42
48	E16_Aa	NovelBoundary	1	0.00	1.47	1.88	1.44	0.00	11.58	1.45
49	ER16a	ExonRegion	0	8.07	9.10	20.86	11.75	1.13	14.47	1.41
50	E16a_E17a	KnownJunction	0	8.70	9.17	29.19	11.81	2.05	9.89	2.67
51	ER17a	ExonRegion	0	6.41	9.47	25.96	8.98	4.08	11.54	2.71
52	E17_Da	NovelBoundary	1	0.00	0.00	0.00	0.00	0.00	22.16	1.68
53	E17a_E18a	KnownJunction	0	4.39	10.22	22.55	14.47	2.21	7.66	3.58
54	E18_Aa	NovelBoundary	1	1.75	1.52	7.54	0.00	0.00	17.90	1.92
55	ER18a	ExonRegion	0	8.66	7.38	27.55	13.07	2.83	7.84	2.80
56	E18_Da	NovelBoundary	1	0.00	0.00	0.89	0.00	0.00	11.47	1.45
57	E18a_E19a	KnownJunction	0	9.63	7.36	31.04	18.23	1.18	4.40	1.45
58	E19_Aa	NovelBoundary	1	0.00	0.00	0.00	1.19	0.00	20.07	0.89
59	ER19a	ExonRegion	0	6.40	6.80	30.97	21.59	2.46	13.12	4.03
60	E19_Da	NovelBoundary	1	0.00	1.29	0.89	0.00	0.00	14.98	0.59
61	E19a_E20a	KnownJunction	1	10.56	10.69	29.06	22.11	2.21	4.13	1.68
62	ER20a	ExonRegion	0	5.42	6.52	24.83	14.04	1.76	9.38	2.66
63	E20_Da	NovelBoundary	0	2.37	2.65	3.29	8.32	1.08	10.61	1.50
64	E20a_E21a	KnownJunction	0	5.86	5.52	20.98	7.37	4.29	2.36	3.98
65	E21_Aa	NovelBoundary	0	1.99	4.41	7.89	6.75	0.97	8.98	2.67
66	ER21a	ExonRegion	0	10.48	8.64	30.12	22.53	3.92	14.84	2.83
67	E21_Da	NovelBoundary	1	0.00	0.00	1.75	1.63	0.00	21.76	1.65
68	E21a_E22a	KnownJunction	1	16.01	7.62	37.35	26.90	5.65	5.76	4.10
69	I21	Intron	1	0.00	0.00	1.72	1.12	0.00	12.59	0.30
70	I21_SR1	SilentIntronRegion	1	0.00	0.00	1.74	1.13	0.00	12.74	0.31
71	E22_Aa	NovelBoundary	1	0.00	0.00	0.89	1.16	0.00	10.69	0.54
72	ER22a	ExonRegion	0	9.86	7.36	28.85	18.03	3.22	21.76	3.28
73	E22_Da	NovelBoundary	1	0.00	0.00	0.79	0.00	0.00	10.37	0.00
74	E22a_E23a	KnownJunction	0	9.13	9.85	23.74	8.37	2.31	4.42	1.78
75	ER23a	ExonRegion	0	6.30	8.26	30.09	10.70	1.92	11.54	2.98
76	E23a_E24a	KnownJunction	0	5.01	9.33	25.35	9.48	0.00	2.39	0.89
77	E24_Aa	NovelBoundary	0	0.88	3.05	4.11	2.93	0.00	12.25	3.55
78	ER24a	ExonRegion	0	5.12	6.40	31.71	17.39	2.16	14.96	1.23
79	E24a_E25a	KnownJunction	0	5.32	4.54	26.08	14.25	3.30	13.80	0.54
80	E25_Aa	NovelBoundary	1	0.00	0.00	0.00	3.20	0.00	10.85	0.89
81	ER25a	ExonRegion	0	7.15	6.72	23.54	15.54	2.60	12.18	0.30
82	E25a_E26a	KnownJunction	0	9.21	5.83	25.84	20.51	5.81	11.12	0.89
83	I25	Intron	1	0.00	0.84	0.69	1.29	0.09	9.73	1.51
84	I25_SR1	SilentIntronRegion	1	0.00	0.84	0.70	1.30	0.09	9.77	1.52
85	E26_Aa	NovelBoundary	1	0.00	0.00	0.00	0.00	0.00	8.25	0.89
86	ER26a	ExonRegion	0	5.43	6.49	14.90	16.22	2.48	17.38	1.28
87	E26_Da	NovelBoundary	1	0.00	0.00	0.00	2.98	0.00	18.22	0.83
88	E26a_E27a	KnownJunction	0	13.37	3.86	24.76	20.86	4.24	9.54	1.50
89	E27_Aa	NovelBoundary	1	0.00	0.00	0.00	1.14	0.00	15.97	0.82
90	ER27a	ExonRegion	1	10.99	4.22	31.59	22.05	3.23	20.47	0.96
91	E27_Da	NovelBoundary	1	0.00	0.00	0.00	1.68	0.00	15.03	0.00
92	E27a_E28a	KnownJunction	0	10.98	4.97	28.81	23.00	2.95	10.80	1.53
93	I27	Intron	1	0.00	0.00	0.10	0.48	0.00	9.01	0.52
94	I27_SR1	SilentIntronRegion	1	0.00	0.00	0.11	0.48	0.00	9.03	0.52
95	ER28a	ExonRegion	0	15.35	6.23	32.30	27.03	5.09	22.69	2.51
96	E28a_E29a	KnownJunction	0	9.61	8.25	25.71	25.14	1.89	16.32	1.69
97	ER29a	ExonRegion	0	7.96	6.19	16.52	23.10	2.28	13.92	1.11
98	E29_Da	NovelBoundary	1	1.80	0.00	0.00	1.27	0.00	12.14	0.00
99	E29a_E30a	KnownJunction	1	3.84	4.36	17.14	15.28	2.12	1.15	0.69
100	I29	Intron	1	0.34	1.08	2.50	0.28	0.36	15.11	0.75
101	I29_SR1	SilentIntronRegion	1	0.73	0.00	1.72	0.00	0.70	8.64	0.00
102	I29_AR1	ActiveIntronRegion	1	0.29	1.24	2.62	0.32	0.32	16.12	0.86
103	ER30a	ExonRegion	1	2.61	3.37	18.66	22.32	2.87	21.49	0.90
104	E30_Da	NovelBoundary	1	0.58	1.37	10.17	4.63	0.00	16.86	1.58
105	E30a_E31a	KnownJunction	0	3.99	4.54	18.68	20.70	3.32	8.15	0.80
106	ER31a	ExonRegion	0	5.93	5.79	30.23	16.21	3.80	9.19	0.56
107	E31_Da	NovelBoundary	1	0.90	0.00	2.64	8.26	0.00	4.58	0.00
108	E31a_E32a	KnownJunction	0	12.63	10.75	48.87	13.03	6.29	8.17	1.55
109	E32_Aa	NovelBoundary	1	0.00	0.00	4.79	2.38	0.00	11.55	2.88
110	ER32a	ExonRegion	0	15.44	14.51	51.92	33.33	6.25	18.70	3.37
111	E32a_E33a	KnownJunction	0	11.40	16.95	53.04	26.82	7.63	10.43	3.77
112	ER33a	ExonRegion	0	10.98	10.87	34.58	25.98	4.43	10.74	2.48
113	E33a_E34a	KnownJunction	0	6.48	3.26	18.83	16.61	3.18	12.41	3.43
114	ER34a	ExonRegion	0	7.63	8.35	21.15	22.31	3.06	12.58	3.41
115	E34a_E35a	KnownJunction	0	8.43	11.90	27.03	41.40	2.35	25.33	2.52
116	ER35a	ExonRegion	0	10.85	13.33	25.39	33.28	1.90	22.28	3.44
117	E35a_E36a	KnownJunction	0	8.76	17.39	26.53	32.13	0.00	20.98	1.61
118	ER36a	ExonRegion	0	9.22	10.82	22.90	33.46	4.31	19.96	3.03
119	E36a_E37a	KnownJunction	0	10.80	7.80	28.77	25.44	8.60	27.39	0.80
120	ER37a	ExonRegion	0	9.40	12.68	21.99	49.34	6.36	28.44	4.68
121	E37a_E38a	KnownJunction	0	11.77	16.03	19.60	50.90	8.44	25.30	5.78
122	ER38a	ExonRegion	0	7.68	13.81	18.56	50.07	2.49	23.78	5.19
123	E38a_E39a	KnownJunction	0	4.41	14.19	12.80	28.20	3.71	26.29	2.88
124	ER39a	ExonRegion	0	5.74	12.25	20.39	36.35	6.54	24.23	5.15
125	E39a_E40a	KnownJunction	0	2.52	9.43	21.57	44.70	0.00	15.38	6.71
126	E40_Aa	NovelBoundary	1	0.00	0.00	0.78	1.46	0.00	10.10	0.00
127	ER40a	ExonRegion	0	2.86	7.79	10.47	15.78	1.90	16.24	2.79
128	IG31_AR10	ActiveIntergenicRegion	0	0.00	0.00	1.08	2.06	0.00	14.35	0.30
129	IG31_SR9	SilentIntergenicRegion	0	0.00	0.00	1.76	3.87	0.00	22.56	0.16
130	IG31_AR9	ActiveIntergenicRegion	0	0.00	0.00	4.03	3.82	0.00	22.23	0.34
131	IG31_SR8	SilentIntergenicRegion	0	0.00	0.00	3.63	3.01	0.10	29.34	0.39
132	IG31_AR8	ActiveIntergenicRegion	0	0.00	0.00	1.19	1.14	0.07	16.27	0.00
133	IG31_AR5	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	24.78	0.00
134	IG31_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.72	0.00	32.42	0.00