Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CHRNE	Gene	0	0.71	3.18	1.77	3.91	0.96	3.13	1.08
2	293780	Transcript	0	0.35	1.07	0.84	1.64	0.64	1.38	0.50
3	IG50_AR1	ActiveIntergenicRegion	0	3.52	2.54	1.05	6.56	9.48	2.77	10.52
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.72	0.00	0.00
5	E1_Da	NovelBoundary	0	5.02	30.34	5.69	7.99	0.00	17.37	3.44
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	I1	Intron	0	2.77	13.98	2.42	6.22	0.39	7.06	3.39
8	I1_SR1	SilentIntronRegion	0	3.28	16.36	2.93	6.70	0.43	7.05	3.90
9	E2_Aa	NovelBoundary	0	8.28	45.42	3.66	49.17	0.00	62.18	5.32
10	ER2a	ExonRegion	0	0.15	0.00	0.20	0.30	0.16	0.78	0.00
11	E2_Da	NovelBoundary	0	3.05	54.83	10.98	63.83	3.41	76.62	2.06
12	E2a_E3a	KnownJunction	0	0.97	0.00	0.89	1.68	1.18	3.06	0.73
13	E3_Aa	NovelBoundary	0	5.11	59.64	11.27	48.57	1.15	48.08	1.66
14	ER3a	ExonRegion	0	1.09	0.00	1.19	1.58	0.41	1.66	0.09
15	E3_Da	NovelBoundary	0	6.91	58.43	13.61	41.02	3.30	58.10	5.33
16	E3a_E4a	KnownJunction	0	0.83	0.00	1.51	1.25	0.00	0.00	0.00
17	E4_Aa	NovelBoundary	0	7.46	56.59	12.85	45.92	0.00	32.88	0.69
18	ER4a	ExonRegion	0	0.43	0.00	0.59	2.90	0.00	0.00	0.78
19	E4_Da	NovelBoundary	0	12.75	48.86	13.16	70.95	0.92	43.50	5.50
20	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	4.71	0.00	0.00	0.69
21	E5_Aa	NovelBoundary	0	14.10	43.24	12.89	58.81	2.21	47.30	3.20
22	ER5a	ExonRegion	0	0.37	0.26	0.97	2.65	0.38	0.00	0.07
23	E5_Da	NovelBoundary	0	4.67	33.02	5.42	30.94	5.74	30.12	5.69
24	E5a_E6a	KnownJunction	0	0.00	1.63	1.71	0.00	1.18	0.00	0.00
25	E6_Aa	NovelBoundary	0	3.54	57.80	6.78	32.94	3.16	28.43	2.28
26	ER6a	ExonRegion	0	0.00	0.95	0.94	0.07	0.23	0.00	0.51
27	E6_Da	NovelBoundary	0	8.75	82.41	17.45	64.96	3.07	76.08	8.46
28	E6a_E7a	KnownJunction	0	0.00	1.63	0.85	0.00	0.00	0.00	0.00
29	E7_Aa	NovelBoundary	0	2.07	30.61	6.51	41.23	5.21	28.70	1.61
30	ER7a	ExonRegion	0	0.00	0.24	0.43	1.40	0.60	0.02	0.28
31	E7_Da	NovelBoundary	0	1.65	36.52	6.29	37.66	2.35	34.95	1.45
32	E7a_E8a	KnownJunction	0	0.00	0.00	1.28	0.00	0.00	0.00	1.45
33	E8_Aa	NovelBoundary	0	5.47	34.89	3.16	24.60	1.18	37.79	0.00
34	ER8a	ExonRegion	0	0.00	0.02	0.74	0.00	0.01	0.86	0.40
35	E8_Da	NovelBoundary	0	1.80	34.21	7.40	26.55	1.18	30.44	0.56
36	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.07	0.00
37	Ix	Intron	0	1.27	12.10	0.00	4.11	1.35	5.09	1.69
38	Ix_AR1	ActiveIntronRegion	0	1.30	12.31	0.00	4.20	1.38	5.19	1.73
39	E9_Aa	NovelBoundary	0	5.27	11.11	3.15	10.94	1.04	4.69	1.68
40	ER9a	ExonRegion	0	1.97	6.33	1.78	0.82	1.63	0.79	1.29
41	E9a_E10a	KnownJunction	0	0.00	1.13	0.00	0.00	1.06	1.02	0.00
42	ER10a	ExonRegion	0	0.01	1.60	0.19	2.89	0.84	2.72	0.83
43	E10a_E11a	KnownJunction	0	0.00	1.21	0.78	7.91	2.05	6.75	0.57
44	ER11a	ExonRegion	0	1.08	1.62	1.37	2.91	1.81	4.80	1.15
45	E11a_E12a	KnownJunction	0	0.00	2.36	0.79	0.00	1.01	2.57	0.89
46	E12_Aa	NovelBoundary	0	4.07	13.58	0.83	1.27	0.00	8.17	1.63
47	ER12a	ExonRegion	0	1.10	5.72	3.02	6.70	1.38	5.60	1.75