Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ITGAE	Gene	0	6.56	2.79	6.44	2.12	19.72	3.49	11.41
2	263087	Transcript	0	0.00	0.32	0.00	0.00	0.00	0.00	0.00
3	397107	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	IG24	Intergenic	0	24.35	17.89	18.51	19.72	42.53	20.63	16.43
5	IG24_AR4	ActiveIntergenicRegion	0	24.18	19.16	21.04	23.62	45.52	19.93	16.56
6	IG24_SR4	SilentIntergenicRegion	0	23.79	29.22	29.31	33.01	41.01	35.84	23.72
7	IG24_AR3	ActiveIntergenicRegion	0	41.37	39.40	40.05	34.14	74.38	31.83	32.38
8	IG24_AR2	ActiveIntergenicRegion	0	51.71	26.85	36.49	37.18	91.54	36.76	27.96
9	IG24_SR2	SilentIntergenicRegion	0	8.99	9.70	3.69	8.04	9.24	8.62	6.55
10	IG24_AR1	ActiveIntergenicRegion	0	4.62	10.06	3.77	7.34	10.63	15.98	10.33
11	ER1a	ExonRegion	0	0.00	0.64	0.00	0.00	0.00	0.00	0.00
12	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER3a	ExonRegion	0	0.00	0.34	0.00	0.00	0.00	0.00	0.00
15	E3a_E4a	KnownJunction	0	0.00	1.63	0.00	0.00	0.00	0.00	0.00
16	ER4a	ExonRegion	0	0.00	0.55	0.00	0.00	0.00	0.00	0.00
17	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER6a	ExonRegion	0	0.49	0.00	0.00	0.00	0.15	0.00	0.00
21	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
22	ER7a	ExonRegion	0	0.00	0.56	0.00	0.00	0.39	0.00	0.31
23	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.67	0.00	0.26
25	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.85	0.00	0.89
26	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.03	0.00	0.32
27	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89
28	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	1.07	0.00	0.36
29	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.85
30	ER11a	ExonRegion	0	0.00	0.00	0.00	0.63	0.00	0.00	0.47
31	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.29	0.00	0.14
37	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.87
38	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.28	0.00	0.22
39	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER17a	ExonRegion	0	0.45	0.00	0.00	0.00	0.00	0.00	0.00
43	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER18a	ExonRegion	0	0.00	0.00	0.00	0.00	0.28	0.00	0.39
45	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER19a	ExonRegion	0	0.00	0.54	0.05	0.58	0.03	0.00	0.31
47	E19a_E20a	KnownJunction	0	0.00	0.00	0.62	0.00	0.00	0.00	0.00
48	ER20a	ExonRegion	0	0.00	0.72	0.34	0.00	0.32	0.00	0.00
49	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	ER21a	ExonRegion	0	0.00	0.00	0.38	0.00	0.00	0.00	0.00
51	E21a_E22a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	0.00	0.00
52	ER22a	ExonRegion	0	0.00	0.69	0.56	0.00	0.31	0.00	0.00
53	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER23a	ExonRegion	0	0.00	0.00	0.50	0.00	0.00	0.00	0.00
55	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER24a	ExonRegion	0	0.00	0.00	0.03	0.00	0.00	0.00	0.00
57	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER25a	ExonRegion	0	0.00	0.00	0.00	0.00	1.57	0.00	0.00
59	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	E26_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	13.51	0.00	0.00
61	ER26a	ExonRegion	0	0.00	0.00	0.00	0.00	3.10	0.00	0.00
62	E26_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	11.80	0.00	0.00
63	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E27_Aa	NovelBoundary	0	0.82	0.00	0.53	0.00	11.02	0.00	0.00
65	ER27a	ExonRegion	0	0.04	0.00	0.21	0.00	11.88	0.03	0.95
66	E27_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	9.82	0.00	0.00
67	E27a_E28a	KnownJunction	0	0.00	0.00	0.85	0.00	0.85	0.00	0.00
68	I27	Intron	0	0.56	0.00	0.44	0.00	44.14	0.16	2.86
69	I27_AR1	ActiveIntronRegion	0	0.59	0.00	0.46	0.00	46.09	0.16	2.99
70	I27_AR2	ActiveIntronRegion	0	3.77	0.00	3.34	0.94	91.01	0.00	3.67
71	E28_Aa	NovelBoundary	0	39.09	11.09	36.83	7.50	192.61	21.60	119.29
72	ER28a	ExonRegion	0	1.59	0.81	2.03	1.44	12.77	1.23	0.54
73	E28a_E29a	KnownJunction	0	2.04	5.49	3.00	3.28	1.18	1.26	0.79
74	E28a_E30a	NovelJunction	0	7.08	6.17	6.44	1.27	5.14	10.72	19.72
75	I28	Intron	0	1.91	0.30	2.36	1.25	7.05	0.00	7.38
76	I28_AR1	ActiveIntronRegion	0	1.92	0.31	2.38	1.26	7.10	0.00	7.42
77	E29_Aa	NovelBoundary	0	0.00	2.26	0.66	0.00	11.48	0.00	12.35
78	ER29a	ExonRegion	0	11.21	9.04	10.35	4.22	17.18	5.45	16.20
79	E29_Da	NovelBoundary	0	6.94	1.10	10.92	0.00	30.38	0.00	21.63
80	E29a_E30a	KnownJunction	0	16.59	11.85	22.37	8.64	26.51	15.06	20.41
81	I29_AR2	ActiveIntronRegion	0	0.57	0.00	0.67	0.90	10.10	0.00	5.28
82	E30_Aa	NovelBoundary	0	2.37	0.00	0.00	0.00	12.86	0.00	3.05
83	ER30a	ExonRegion	0	38.03	15.87	42.96	14.86	85.88	22.80	85.43
84	E30a_E31a	KnownJunction	0	87.19	21.60	69.54	21.35	163.63	39.02	150.47
85	ER31a	ExonRegion	0	61.60	23.59	55.57	14.56	314.57	40.99	128.83
86	E31a_E32a	KnownJunction	0	51.97	34.91	55.96	24.46	119.78	31.92	94.20
87	ER32a	ExonRegion	0	43.77	16.80	42.73	14.39	92.59	19.90	63.11