Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ZZEF1	Gene	0	85.53	65.30	76.91	67.40	29.41	63.97	44.50
2	381638	Transcript	0	98.07	66.82	85.85	67.30	32.00	57.42	45.53
3	IG29_AR2	ActiveIntergenicRegion	0	3.01	8.01	3.97	9.29	1.18	9.68	3.37
4	IG29_SR1	SilentIntergenicRegion	0	3.45	7.77	4.73	7.76	1.64	7.11	3.66
5	ER1a	ExonRegion	0	3.44	13.94	4.08	11.57	1.09	10.05	3.20
6	E1a_E2a	KnownJunction	0	14.80	25.33	13.98	23.76	5.21	24.12	12.38
7	ER2a	ExonRegion	0	39.50	53.86	37.77	45.31	9.10	30.92	21.70
8	E2a_E3a	KnownJunction	1	30.54	55.12	35.83	36.76	10.95	21.65	17.15
9	ER3a	ExonRegion	0	37.46	71.45	52.71	52.52	13.92	36.50	23.70
10	E3a_E4a	KnownJunction	0	39.22	62.37	49.82	33.00	11.07	29.96	24.38
11	ER4a	ExonRegion	0	56.02	76.89	69.01	62.75	23.95	48.87	36.87
12	E4a_E5a	KnownJunction	0	66.79	60.45	80.13	50.15	21.37	43.23	41.46
13	ER5a	ExonRegion	0	68.92	72.47	70.14	72.26	25.07	44.56	51.97
14	E5a_E6a	KnownJunction	0	85.65	63.26	92.69	62.28	19.18	40.87	52.94
15	E5a_E7a	NovelJunction	0	4.12	10.98	3.29	6.01	0.88	1.21	5.14
16	ER6a	ExonRegion	0	75.96	62.22	75.14	55.75	20.40	33.60	41.70
17	E6a_E7a	KnownJunction	1	53.29	61.11	63.46	38.12	18.90	27.44	42.12
18	ER7a	ExonRegion	0	63.96	70.90	63.99	50.82	20.00	33.75	36.98
19	E7a_E8a	KnownJunction	0	41.59	68.54	48.08	61.52	15.19	38.51	36.14
20	ER8a	ExonRegion	0	88.43	59.85	74.36	51.08	28.15	33.64	41.07
21	E8_Da	NovelBoundary	1	42.88	0.00	28.18	0.00	0.00	0.00	2.01
22	E8a_E9a	KnownJunction	1	111.31	45.61	81.32	43.64	44.10	26.32	25.55
23	ER9a	ExonRegion	1	164.03	56.78	104.67	63.63	31.27	44.97	33.72
24	E9a_E10a	KnownJunction	1	219.74	58.95	130.87	68.59	34.30	41.35	32.36
25	ER10a	ExonRegion	1	181.87	51.79	109.90	54.45	35.11	46.97	26.26
26	E10a_E11a	KnownJunction	1	158.15	45.42	86.18	50.85	39.24	34.38	29.67
27	ER11a	ExonRegion	1	138.82	49.33	88.87	53.75	25.82	34.76	32.00
28	E11a_E12a	KnownJunction	1	99.32	56.59	79.19	43.94	27.80	21.84	39.25
29	ER12a	ExonRegion	0	77.57	45.07	59.60	53.26	18.34	33.68	30.64
30	E12a_E13a	KnownJunction	0	79.21	37.38	67.22	40.53	20.22	25.97	21.68
31	ER13a	ExonRegion	0	87.66	45.64	65.10	43.68	23.00	30.93	24.58
32	E13a_E14a	KnownJunction	1	114.36	52.99	70.89	54.78	25.96	37.49	22.00
33	ER14a	ExonRegion	1	155.24	50.07	105.74	52.84	29.88	38.73	28.26
34	E14a_E15a	KnownJunction	1	137.41	58.66	89.86	53.75	26.26	31.52	27.34
35	ER15a	ExonRegion	0	102.26	72.50	76.45	54.29	26.35	38.31	31.91
36	E15a_E16a	KnownJunction	0	76.36	69.80	69.64	67.00	17.27	36.29	31.31
37	ER16a	ExonRegion	0	75.15	61.99	61.21	60.65	24.81	40.38	39.00
38	E16a_E17a	KnownJunction	0	53.81	47.66	44.65	43.59	7.81	35.94	25.95
39	E17_Aa	NovelBoundary	1	34.46	0.00	18.49	0.00	2.97	0.00	3.87
40	ER17a	ExonRegion	0	71.51	65.55	49.24	56.22	16.51	34.60	33.37
41	E17a_E18a	KnownJunction	1	69.71	73.61	54.19	64.59	22.08	32.03	31.77
42	ER18a	ExonRegion	1	53.27	73.57	53.85	54.58	16.86	29.03	29.72
43	E18a_E19a	KnownJunction	1	44.85	63.16	47.21	41.21	14.55	22.94	29.41
44	ER19a	ExonRegion	1	68.20	55.26	61.94	40.81	22.24	19.17	33.10
45	E19a_E20a	KnownJunction	0	78.46	57.09	79.15	46.65	16.78	28.27	34.85
46	ER20a	ExonRegion	0	113.62	72.12	116.47	67.19	28.81	48.55	42.57
47	E20a_E21a	KnownJunction	0	130.00	70.22	122.91	80.87	40.18	46.63	47.88
48	ER21a	ExonRegion	0	98.82	67.98	106.07	64.16	29.27	40.13	37.52
49	E21a_E22a	KnownJunction	0	117.70	56.30	97.34	59.65	26.58	37.52	33.79
50	ER22a	ExonRegion	0	180.67	84.29	137.63	75.70	46.43	48.13	48.82
51	E22a_E23a	KnownJunction	1	292.27	92.97	197.02	97.56	76.70	80.13	60.49
52	ER23a	ExonRegion	1	276.62	111.72	196.12	108.32	49.42	76.30	67.02
53	E23a_E24a	KnownJunction	1	214.02	97.20	145.27	72.96	37.37	60.22	54.92
54	ER24a	ExonRegion	0	165.56	64.24	107.29	66.50	41.99	46.99	51.01
55	E24a_E25a	KnownJunction	0	94.10	48.29	60.51	56.95	17.27	53.14	48.43
56	E24a_E26a	NovelJunction	0	3.27	7.93	1.47	11.70	0.00	8.58	0.00
57	ER25a	ExonRegion	0	132.44	58.30	94.41	58.03	31.75	43.49	51.32
58	E25a_E26a	KnownJunction	0	74.65	47.60	73.81	37.17	28.63	50.92	48.84
59	ER26a	ExonRegion	0	113.32	52.21	90.72	55.24	21.10	40.55	38.14
60	E26a_E27a	KnownJunction	1	172.32	65.68	123.44	80.30	25.27	60.46	35.37
61	ER27a	ExonRegion	1	174.29	62.60	124.91	75.32	23.83	66.80	38.81
62	E27a_E28a	KnownJunction	0	134.95	53.70	95.40	47.52	25.40	59.25	36.52
63	ER28a	ExonRegion	0	139.61	43.62	107.30	54.40	27.41	47.61	37.39
64	E28a_E29a	KnownJunction	1	152.78	41.88	140.15	58.76	22.52	42.24	39.54
65	ER29a	ExonRegion	0	76.96	49.26	68.69	50.39	20.50	43.51	34.06
66	E29a_E30a	KnownJunction	0	53.96	39.75	55.28	50.88	13.62	36.90	34.88
67	ER30a	ExonRegion	0	99.19	51.50	81.05	59.89	30.50	42.12	39.65
68	E30a_E31a	KnownJunction	0	132.45	49.21	93.97	55.78	44.93	55.82	49.10
69	ER31a	ExonRegion	0	138.50	77.95	120.33	72.05	33.43	49.00	51.49
70	E31a_E32a	KnownJunction	0	111.57	79.00	88.42	78.00	37.28	59.07	52.70
71	ER32a	ExonRegion	0	103.65	64.13	93.69	61.49	40.46	52.14	51.13
72	E32a_E33a	KnownJunction	0	65.04	49.76	86.72	65.48	47.51	53.04	45.57
73	E32a_E34a	NovelJunction	1	7.39	17.65	7.89	23.46	2.01	36.37	10.81
74	E33_Aa	NovelBoundary	1	30.71	1.26	38.87	1.14	0.90	1.07	4.87
75	ER33a	ExonRegion	0	99.06	73.72	95.39	72.41	45.56	57.15	56.84
76	E33a_E34a	KnownJunction	0	107.50	60.82	103.62	73.88	56.18	51.40	53.11
77	ER34a	ExonRegion	0	108.22	87.45	111.00	86.44	51.80	76.15	68.07
78	E34a_E35a	KnownJunction	0	120.37	87.72	106.87	90.92	49.49	72.01	61.63
79	ER35a	ExonRegion	0	94.89	97.44	97.11	83.33	41.54	86.95	62.18
80	E35a_E36a	KnownJunction	0	99.89	86.70	93.21	99.83	41.52	81.95	43.77
81	ER36a	ExonRegion	0	60.59	79.81	61.49	72.53	27.76	59.10	42.12
82	E36a_E37a	KnownJunction	0	56.76	66.13	70.87	78.84	44.70	67.99	43.55
83	ER37a	ExonRegion	0	57.45	76.79	76.25	72.56	26.92	76.43	48.56
84	E37a_E38a	KnownJunction	0	62.70	83.75	90.86	81.35	28.12	83.91	39.54
85	ER38a	ExonRegion	0	100.28	104.87	116.83	89.10	44.11	106.76	66.97
86	E38a_E39a	KnownJunction	0	77.57	104.32	105.61	87.34	39.84	103.31	54.03
87	ER39a	ExonRegion	0	113.94	89.99	127.00	81.01	43.81	93.40	69.40
88	E39a_E40a	KnownJunction	0	84.99	69.28	109.09	59.68	42.58	80.77	49.84
89	ER40a	ExonRegion	0	82.15	63.38	96.23	74.83	38.91	83.55	61.89
90	E40a_E41a	KnownJunction	0	59.42	54.59	63.42	61.82	21.83	60.51	59.78
91	I40	Intron	0	17.42	4.89	24.46	7.34	2.13	7.08	7.93
92	I40_SR1	SilentIntronRegion	0	17.24	4.31	21.62	6.24	2.82	6.89	8.14
93	I40_AR1	ActiveIntronRegion	0	17.73	5.57	27.73	8.61	1.38	7.30	7.75
94	ER41a	ExonRegion	0	64.98	83.49	69.59	71.83	33.36	74.57	55.09
95	E41a_E42a	KnownJunction	0	75.59	108.95	76.54	94.36	26.86	103.45	69.54
96	ER42a	ExonRegion	0	92.65	103.98	96.77	97.90	41.97	88.89	62.36
97	E42a_E43a	KnownJunction	0	84.77	84.31	72.70	71.55	40.07	65.10	53.51
98	ER43a	ExonRegion	0	97.79	74.65	100.79	79.91	47.10	68.13	51.21
99	E43a_E44a	KnownJunction	0	147.34	79.55	132.32	73.42	57.79	73.62	62.01
100	ER44a	ExonRegion	0	171.87	83.50	140.25	103.18	61.23	75.96	62.91
101	E44_Da	NovelBoundary	1	24.22	29.16	10.38	18.15	5.83	8.98	9.85
102	E44a_E45a	KnownJunction	0	101.36	58.22	100.33	70.95	40.02	48.72	54.60
103	ER45a	ExonRegion	0	116.19	62.22	95.08	68.62	37.09	58.62	48.55
104	E45a_E46a	KnownJunction	0	94.20	59.37	82.60	58.25	39.01	76.49	51.09
105	ER46a	ExonRegion	0	83.21	58.37	81.71	68.99	35.06	67.20	49.93
106	E46a_E47a	KnownJunction	0	69.81	67.86	73.36	65.26	50.58	61.61	60.16
107	ER47a	ExonRegion	0	55.95	67.82	63.77	77.63	30.59	70.03	54.25
108	E47a_E48a	KnownJunction	0	57.63	56.25	47.47	71.09	14.68	75.79	43.42
109	ER48a	ExonRegion	0	59.58	71.37	61.48	92.77	32.77	80.81	57.31
110	E48a_E49a	KnownJunction	0	55.83	63.08	84.66	122.56	35.46	96.93	53.11
111	ER49a	ExonRegion	0	68.67	69.36	85.40	101.38	41.15	105.95	78.67
112	E49a_E50a	KnownJunction	0	83.70	76.16	103.21	99.97	55.86	110.66	76.06
113	ER50a	ExonRegion	0	64.85	72.98	78.70	97.27	40.54	100.50	70.32
114	E50a_E51a	KnownJunction	0	85.57	68.25	92.01	63.26	60.72	61.26	71.28
115	ER51a	ExonRegion	0	78.71	70.84	77.43	80.26	41.99	74.92	61.18
116	E51_Da	NovelBoundary	1	22.10	16.08	10.26	9.51	0.00	27.60	3.75
117	E51a_E52a	KnownJunction	0	68.01	70.07	72.31	47.49	14.78	73.16	38.97
118	ER52a	ExonRegion	0	101.96	82.43	85.91	97.77	43.57	94.19	56.41
119	E52a_E53a	KnownJunction	0	132.42	80.21	109.63	116.38	55.53	93.34	64.61
120	ER53a	ExonRegion	0	96.96	91.06	72.59	109.34	43.11	100.36	73.08
121	E53a_E54a	KnownJunction	0	105.58	86.80	66.10	103.41	35.71	113.68	70.74
122	ER54a	ExonRegion	0	99.30	84.52	75.50	86.44	41.85	102.46	64.60
123	E54_Da	NovelBoundary	0	14.79	23.36	12.17	16.47	10.54	15.25	15.65
124	E54a_E55a	KnownJunction	0	80.80	75.35	80.36	83.06	41.56	104.20	69.18
125	I54	Intron	0	20.24	16.03	13.21	15.35	5.64	17.62	10.02
126	I54_AR1	ActiveIntronRegion	0	20.38	21.97	15.95	13.19	4.56	15.31	9.60
127	I54_AR2	ActiveIntronRegion	1	21.02	14.52	12.75	16.77	6.27	19.19	10.58
128	E55_Aa	NovelBoundary	0	51.09	10.98	44.52	16.93	7.08	13.51	10.73
129	ER55a	ExonRegion	0	65.41	61.58	60.95	69.95	25.57	92.21	42.56