Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RABEP1	Gene	0	94.21	78.05	161.63	118.65	188.85	123.39	138.55
2	262477	Transcript	0	112.91	49.25	199.45	111.96	211.67	122.39	148.90
3	341923	Transcript	0	0	0	0	0	0	0	0
4	408982	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	3.30	11.71	2.32	8.99	4.03	15.65	3.75
6	E1_Ab	KnownBoundary	0	14.59	28.69	18.24	40.37	15.88	42.85	21.11
7	ER1b	ExonRegion	0	24.87	34.09	35.65	41.91	26.87	51.42	27.68
8	E1a_E2a	KnownJunction	0	41.86	38.57	59.32	53.34	48.46	69.97	43.87
9	ER2a	ExonRegion	0	94.15	110.28	147.77	113.90	156.32	163.11	87.14
10	E2a_E3a	KnownJunction	0	124.74	153.32	201.98	176.55	176.31	218.63	124.67
11	ER3a	ExonRegion	0	123.50	130.57	202.90	153.93	206.71	158.87	158.96
12	E3a_E4a	KnownJunction	0	119.98	101.46	163.61	117.52	183.48	117.65	164.25
13	E3a_E5a	NovelJunction	0	6.66	14.19	8.82	19.07	1.08	10.48	3.21
14	ER4a	ExonRegion	0	84.29	93.79	167.18	130.19	187.61	129.12	141.93
15	E4a_E5a	KnownJunction	0	87.41	67.57	182.09	105.17	198.14	96.67	128.88
16	E4a_E6a	NovelJunction	1	1.03	0.00	2.21	7.12	1.15	10.48	0.00
17	ER5a	ExonRegion	0	93.77	70.66	201.01	113.48	213.39	117.26	129.52
18	E5_Da	NovelBoundary	1	70.16	22.49	92.09	11.73	43.06	6.14	19.62
19	E5a_E6a	KnownJunction	0	82.53	59.32	188.12	88.05	137.16	141.26	125.03
20	I5_AR1	ActiveIntronRegion	0	23.44	10.47	12.72	4.69	44.62	6.60	10.22
21	ER6a	ExonRegion	0	85.78	77.84	213.22	108.50	187.12	146.40	146.06
22	E6a_E7a	KnownJunction	0	91.23	77.11	186.41	77.37	263.72	141.99	156.51
23	E6a_E8a	NovelJunction	0	3.72	2.47	2.30	11.13	0.00	5.60	1.42
24	ER7a	ExonRegion	0	77.98	65.01	173.19	100.63	202.08	119.68	161.33
25	E7a_E8a	KnownJunction	0	64.57	57.46	156.00	91.43	193.99	110.79	158.76
26	ER8a	ExonRegion	0	80.55	61.32	179.40	109.66	201.48	111.02	167.09
27	E8a_E9a	KnownJunction	0	85.44	50.91	140.41	105.19	249.59	80.21	119.09
28	I8_AR2	ActiveIntronRegion	1	30.87	18.61	12.43	22.21	3.96	13.46	5.79
29	E9_Aa	NovelBoundary	1	34.35	22.44	17.39	23.14	4.13	5.60	14.59
30	ER9a	ExonRegion	0	115.83	91.76	173.04	146.93	226.82	123.74	152.63
31	E9a_E10a	KnownJunction	0	164.00	95.71	208.67	178.15	291.13	162.41	182.10
32	I9	Intron	1	24.04	23.25	11.38	22.07	3.99	16.12	4.62
33	I9_AR1	ActiveIntronRegion	1	6.51	15.61	4.50	12.37	2.39	3.62	4.69
34	I9_SR1	SilentIntronRegion	0	20.69	30.46	13.59	29.90	4.30	17.75	5.98
35	I9_AR2	ActiveIntronRegion	0	13.29	21.77	8.54	24.89	1.62	13.07	4.16
36	I9_SR2	SilentIntronRegion	1	28.09	20.82	11.25	19.20	4.19	16.80	4.03
37	E10_Aa	NovelBoundary	1	60.12	41.09	22.10	31.62	7.98	12.78	6.81
38	ER10a	ExonRegion	0	171.87	108.74	237.03	190.41	305.75	179.99	186.96
39	E10_Da	NovelBoundary	1	75.61	13.95	93.78	19.05	4.22	8.98	4.94
40	E10a_E11a	KnownJunction	0	123.72	75.29	200.91	145.37	259.81	126.71	118.88
41	I10_AR1	ActiveIntronRegion	1	28.36	12.42	6.24	7.70	3.24	12.33	1.56
42	I10_AR2	ActiveIntronRegion	1	27.20	17.91	7.24	7.95	2.72	8.77	2.51
43	ER11a	ExonRegion	0	106.10	70.56	155.25	114.49	237.30	126.30	140.23
44	E11a_E12a	KnownJunction	0	77.42	77.37	126.52	108.93	246.57	119.50	135.63
45	ER12a	ExonRegion	0	64.25	81.80	123.37	120.64	184.97	131.54	132.99
46	E12_Da	NovelBoundary	1	28.64	12.51	6.77	3.63	2.12	5.68	3.53
47	E12a_E13a	KnownJunction	0	48.55	77.55	98.03	106.96	137.88	138.07	145.91
48	ER13a	ExonRegion	0	65.77	92.82	103.66	128.27	154.53	132.32	161.01
49	E13a_E14a	KnownJunction	0	53.49	66.57	111.34	118.74	108.00	101.68	155.77
50	ER14a	ExonRegion	0	99.31	69.64	157.15	129.61	168.26	122.70	156.78
51	E14a_E15a	KnownJunction	0	137.19	52.67	198.47	131.26	227.16	149.65	163.75
52	I14	Intron	1	19.95	13.51	8.82	8.35	5.16	9.65	1.09
53	I14_AR1	ActiveIntronRegion	1	24.81	18.63	10.17	10.24	7.38	9.48	1.17
54	E15_Aa	NovelBoundary	1	37.15	34.44	13.41	28.72	10.07	24.31	3.18
55	ER15a	ExonRegion	0	132.90	69.92	213.13	140.84	199.57	157.12	155.06
56	E15_Da	NovelBoundary	1	48.07	25.98	16.01	22.00	8.48	30.28	3.98
57	E15a_E16a	KnownJunction	0	110.42	59.01	192.84	115.52	236.45	114.78	127.76
58	E15a_E17a	KnownJunction	0	4.07	4.36	6.84	2.98	5.00	7.93	1.45
59	I15	Intron	0	21.44	27.22	10.99	21.32	6.83	16.61	7.30
60	I15_AR1	ActiveIntronRegion	0	25.80	24.79	14.42	19.67	11.32	16.62	9.67
61	I15_SR1	SilentIntronRegion	0	22.33	35.58	12.61	30.29	9.20	16.67	10.21
62	I15_AR2	ActiveIntronRegion	1	20.95	39.68	9.16	28.02	5.20	23.14	7.18
63	I15_SR2	SilentIntronRegion	0	18.44	21.31	9.23	16.79	4.21	14.40	6.34
64	I15_AR3	ActiveIntronRegion	0	21.05	16.17	10.95	15.80	5.82	9.72	2.54
65	E16_Aa	NovelBoundary	1	64.86	22.09	99.44	10.89	6.50	3.27	3.31
66	ER16a	ExonRegion	0	127.74	53.98	220.01	124.85	208.39	132.32	169.11
67	E16_Da	NovelBoundary	1	21.35	21.36	13.74	14.06	5.30	1.66	3.61
68	E16a_E17a	KnownJunction	1	100.56	34.76	185.52	95.52	190.16	120.06	149.84
69	E16a_E18a	NovelJunction	0	1.69	3.86	0.73	4.17	0.97	8.47	0.62
70	I16	Intron	1	46.55	40.16	23.69	24.48	13.21	18.25	10.20
71	I16_SR1	SilentIntronRegion	1	64.32	41.45	29.27	24.38	12.19	21.59	8.08
72	I16_AR2	ActiveIntronRegion	1	53.36	51.16	27.54	29.56	17.23	22.22	13.53
73	E17_Aa	NovelBoundary	1	60.62	35.83	28.83	31.91	15.81	34.81	12.61
74	ER17a	ExonRegion	0	121.18	63.59	198.03	104.36	206.11	128.46	154.84
75	E17_Da	NovelBoundary	1	40.31	44.56	21.38	21.59	19.53	9.57	10.33
76	E17a_E18a	KnownJunction	1	98.57	29.66	180.06	85.45	191.78	130.94	136.82
77	I17	Intron	1	14.97	28.54	12.43	17.77	10.92	8.85	9.16
78	I17_AR1	ActiveIntronRegion	1	18.49	37.99	14.96	24.55	14.41	11.51	12.43
79	E18_Aa	NovelBoundary	1	28.26	27.11	19.70	18.99	19.23	8.63	14.43
80	ER18a	ExonRegion	0	69.91	39.61	121.46	76.58	196.25	86.28	116.28
81	IG14	Intergenic	0	88.33	61.97	100.46	90.92	170.46	94.32	81.41
82	IG14_AR1	ActiveIntergenicRegion	0	170.35	69.62	184.13	122.75	278.79	120.09	146.50
83	IG14_AR3	ActiveIntergenicRegion	0	77.21	60.97	89.12	86.65	155.81	90.87	72.60