Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MYH13	Gene	0	0.00	0.00	0.07	0.77	0.02	16.54	0.00
2	252172	Transcript	0	0.00	0.00	0.03	0.30	0.01	7.11	0.00
3	IG27_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.25	0.00	7.89	0.00
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.10	0.00
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	I2	Intron	0	0.00	0.00	0.02	0.49	0.00	11.16	0.00
8	I2_SR1	SilentIntronRegion	0	0.00	0.00	0.02	0.49	0.00	11.17	0.00
9	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	9.42	0.00
10	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	I3	Intron	0	0.00	0.00	0.03	0.46	0.00	15.61	0.00
12	I3_SR1	SilentIntronRegion	0	0.00	0.00	0.03	0.46	0.00	15.62	0.00
13	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	23.64	0.00
14	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	6.43	0.00
15	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	10.37	0.00
18	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	I5	Intron	0	0.00	0.00	0.18	0.79	0.00	14.37	0.00
20	I5_SR1	SilentIntronRegion	0	0.00	0.00	0.19	0.80	0.00	14.40	0.00
21	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	2.87	0.00	10.40	0.00
24	ER7a	ExonRegion	0	0.00	0.00	0.00	1.65	0.00	12.40	0.00
25	E7_Da	NovelBoundary	0	0.00	0.00	0.00	1.65	0.00	15.01	0.00
26	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	I7	Intron	0	0.00	0.00	0.00	0.37	0.00	12.81	0.00
28	I7_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.37	0.00	12.84	0.00
29	E8_Aa	NovelBoundary	0	0.00	0.00	0.00	1.68	0.00	27.09	0.00
30	ER8a	ExonRegion	0	0.00	0.00	0.00	0.01	0.00	6.02	0.00
31	E8_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	18.06	0.00
32	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	I8	Intron	0	0.00	0.00	0.05	0.82	0.00	15.34	0.00
34	I8_SR1	SilentIntronRegion	0	0.00	0.00	0.05	0.82	0.00	15.36	0.00
35	E9_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	15.09	0.00
36	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E9_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	22.19	0.00
38	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E10_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	22.40	0.00
40	ER10a	ExonRegion	0	0.00	0.00	0.00	0.96	0.00	11.28	0.00
41	E10_Da	NovelBoundary	0	0.00	0.00	0.00	1.35	0.00	18.52	0.00
42	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	6.22	0.00
44	E11_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	38.46	0.00
45	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	I11	Intron	0	0.00	0.00	0.12	1.33	0.00	54.06	0.00
47	I11_SR1	SilentIntronRegion	0	0.00	0.00	0.10	1.39	0.00	51.62	0.00
48	I11_AR1	ActiveIntronRegion	0	0.00	0.00	0.34	1.02	0.00	121.79	0.00
49	I11_SR2	SilentIntronRegion	0	0.00	0.00	0.48	0.00	0.00	71.90	0.00
50	E12_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	86.43	0.00
51	ER12a	ExonRegion	0	0.00	0.00	0.00	3.36	0.00	72.95	0.00
52	E12_Da	NovelBoundary	0	0.00	0.00	0.00	2.79	0.00	80.69	0.00
53	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	I12	Intron	0	0.00	0.04	0.13	1.02	0.00	41.33	0.00
55	I12_SR1	SilentIntronRegion	0	0.00	0.04	0.13	1.02	0.00	41.36	0.00
56	E13_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	46.77	0.00
57	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	23.25	0.00
58	E13_Da	NovelBoundary	0	0.00	0.00	0.00	1.22	0.90	135.10	0.00
59	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	I13	Intron	0	0.00	0.00	0.00	2.29	0.06	54.55	0.00
61	I13_SR1	SilentIntronRegion	0	0.00	0.00	0.00	2.30	0.06	54.69	0.00
62	E14_Aa	NovelBoundary	0	0.00	0.00	0.00	5.17	0.00	70.78	0.00
63	ER14a	ExonRegion	0	0.00	0.00	0.00	1.26	0.00	6.19	0.00
64	E14_Da	NovelBoundary	0	0.00	0.00	0.00	1.27	0.00	40.39	0.00
65	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	I14	Intron	0	0.00	0.00	0.00	1.98	0.00	21.60	0.00
67	I14_SR1	SilentIntronRegion	0	0.00	0.00	0.00	2.01	0.00	21.97	0.00
68	E15_Aa	NovelBoundary	0	0.00	0.00	0.00	5.01	0.00	86.48	0.00
69	ER15a	ExonRegion	0	0.00	0.00	0.00	2.77	0.00	34.87	0.00
70	E15_Da	NovelBoundary	0	0.00	0.00	0.00	1.68	0.00	86.08	0.00
71	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	I15	Intron	0	0.00	0.00	0.00	1.21	0.00	47.13	0.00
73	I15_SR1	SilentIntronRegion	0	0.00	0.00	0.00	1.21	0.00	47.27	0.00
74	E16_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	100.28	0.00
75	ER16a	ExonRegion	0	0.00	0.00	0.00	3.06	0.00	51.76	0.00
76	E16_Da	NovelBoundary	0	0.00	0.00	0.00	2.71	0.00	93.37	0.00
77	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	I16	Intron	0	0.00	0.00	0.03	0.49	0.00	23.31	0.00
79	I16_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.46	0.00	39.91	0.00
80	I16_AR1	ActiveIntronRegion	0	0.00	0.00	0.08	0.58	0.00	23.50	0.00
81	I16_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.42	0.00	13.86	0.00
82	E17_Aa	NovelBoundary	0	0.00	0.00	0.66	1.11	0.00	26.32	0.00
83	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.38	0.00
84	E17_Da	NovelBoundary	0	0.00	0.00	0.00	1.63	0.00	22.35	0.00
85	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
86	I17	Intron	0	0.00	0.00	0.00	0.00	0.00	15.37	0.00
87	I17_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	15.63	0.00
88	E18_Aa	NovelBoundary	0	0.00	0.00	0.89	1.25	0.00	22.83	0.00
89	ER18a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	9.25	0.00
90	E18_Da	NovelBoundary	0	0.00	0.00	0.83	0.00	0.00	22.03	0.00
91	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
92	I18	Intron	0	0.00	0.00	0.09	0.78	0.04	14.35	0.00
93	I18_SR1	SilentIntronRegion	0	0.00	0.00	0.09	0.78	0.04	14.36	0.00
94	E19_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	12.57	0.00
95	ER19a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	14.12	0.00
96	E19_Da	NovelBoundary	0	0.00	0.00	0.00	3.01	0.00	17.96	0.00
97	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
98	I19	Intron	0	0.00	0.00	0.00	1.13	0.00	12.18	0.00
99	I19_SR1	SilentIntronRegion	0	0.00	0.00	0.00	1.13	0.00	12.21	0.00
100	E20_Aa	NovelBoundary	0	0.00	0.00	0.00	1.65	0.00	21.68	0.00
101	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	12.08	0.00
102	E20_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	28.51	0.00
103	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
104	I20	Intron	0	0.00	0.00	0.00	0.65	0.00	22.09	0.00
105	I20_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.66	0.00	22.14	0.00
106	E21_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	12.33	0.00
107	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	19.66	0.00
108	E21_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	42.24	0.00
109	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
110	I21	Intron	0	0.00	0.00	0.15	0.93	0.06	30.72	0.00
111	I21_SR1	SilentIntronRegion	0	0.00	0.00	0.15	0.93	0.06	30.76	0.00
112	E22_Aa	NovelBoundary	0	0.00	0.00	0.00	4.69	0.00	39.93	0.00
113	ER22a	ExonRegion	0	0.00	0.00	0.00	1.10	0.00	39.19	0.00
114	E22_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	62.58	0.00
115	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
116	I22	Intron	0	0.00	0.00	0.12	0.22	0.00	14.84	0.00
117	I22_SR1	SilentIntronRegion	0	0.00	0.00	0.12	0.22	0.00	14.86	0.00
118	E23_Aa	NovelBoundary	0	0.00	0.00	0.00	1.68	0.00	27.84	0.00
119	ER23a	ExonRegion	0	0.00	0.00	0.35	1.97	0.00	18.03	0.00
120	E23_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	30.90	0.00
121	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
122	E24_Aa	NovelBoundary	0	0.00	0.00	0.00	1.03	0.00	14.93	0.00
123	ER24a	ExonRegion	0	0.00	0.00	0.58	1.03	0.23	15.11	0.00
124	E24_Da	NovelBoundary	0	0.00	0.00	0.00	1.25	0.00	23.16	0.00
125	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
126	I24	Intron	0	0.00	0.00	0.13	0.48	0.00	11.94	0.00
127	I24_SR1	SilentIntronRegion	0	0.00	0.00	0.13	0.48	0.00	11.97	0.00
128	E25_Aa	NovelBoundary	0	0.00	0.00	0.00	3.39	0.00	266.93	0.00
129	ER25a	ExonRegion	0	0.00	0.00	0.00	4.52	0.00	131.53	0.00
130	E25_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	13.32	0.00
131	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
132	ER26a	ExonRegion	0	0.00	0.00	0.57	0.00	0.00	3.06	0.00
133	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
134	I26_SR1	SilentIntronRegion	0	0.00	0.00	0.12	0.90	0.00	7.90	0.00
135	ER27a	ExonRegion	0	0.00	0.00	0.00	0.73	0.00	2.86	0.00
136	E27a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
137	I27	Intron	0	0.00	0.00	0.24	1.08	0.00	50.83	0.03
138	I27_AR1	ActiveIntronRegion	0	0.00	0.00	0.59	5.07	0.00	236.87	0.16
139	E28_Aa	NovelBoundary	0	0.00	0.00	1.18	0.00	0.00	9.70	0.00
140	ER28a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	5.11	0.00
141	E28_Da	NovelBoundary	0	0.00	0.00	1.52	0.00	0.00	9.65	0.00
142	E28a_E29a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
143	E29_Aa	NovelBoundary	0	0.00	0.00	0.83	0.00	0.00	12.11	0.00
144	ER29a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	2.33	0.00
145	E29_Da	NovelBoundary	0	0.00	0.00	0.68	0.00	0.00	12.33	0.00
146	E29a_E30a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
147	ER30a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	5.13	0.00
148	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
149	ER31a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	4.51	0.00
150	E31a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.98	0.00
151	E32_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	8.47	0.00
152	ER32a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	3.34	0.00
153	E32a_E33a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
154	ER33a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	2.28	0.00
155	E33a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
156	E34_Aa	NovelBoundary	0	0.00	0.00	0.89	0.00	0.00	58.99	0.00
157	ER34a	ExonRegion	0	0.00	0.00	0.33	0.61	0.00	17.45	0.00
158	E34a_E35a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
159	ER35a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	2.27	0.00
160	E35a_E36a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
161	ER36a	ExonRegion	0	0.00	0.00	0.26	0.00	0.32	0.00	0.00
162	E36a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
163	ER37a	ExonRegion	0	0.00	0.00	0.01	0.55	0.24	1.09	0.00
164	E37a_E38a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
165	E38_Aa	NovelBoundary	0	0.00	0.00	1.24	0.00	0.00	10.13	0.00
166	ER38a	ExonRegion	0	0.00	0.00	0.46	0.00	0.00	3.51	0.00
167	E38a_E39a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
168	ER39a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	3.83	0.00
169	E39a_E40a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
170	ER40a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	2.08	0.00
171	ER41a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00