Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AFG3L1	Gene	0	6.87	5.75	9.17	1.76	4.85	1.53	4.06
2	388970	Transcript	0	7.30	6.84	9.95	1.77	5.45	1.64	4.33
3	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	Ix	Intron	0	7.53	3.09	4.42	2.26	8.68	0.98	7.58
6	Ix_AR2	ActiveIntronRegion	0	9.52	5.29	5.67	3.03	11.84	1.25	10.40
7	Ix_SR2	SilentIntronRegion	0	12.23	2.33	5.54	1.31	13.71	0.76	10.56
8	Ix_SR3	SilentIntronRegion	0	5.63	1.03	2.77	0.57	7.65	0.19	4.07
9	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	Ix	Intron	0	3.72	5.27	2.92	1.32	11.01	0.13	8.42
12	Ix_AR1	ActiveIntronRegion	0	4.56	3.91	1.84	1.92	11.26	0.00	8.35
13	Ix_AR2	ActiveIntronRegion	0	4.68	8.47	4.05	2.02	16.01	0.00	12.99
14	Ix_SR1	SilentIntronRegion	0	2.38	5.54	3.70	0.34	8.74	0.33	6.65
15	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	Ix_AR1	ActiveIntronRegion	0	9.71	2.39	3.62	0.57	7.16	0.28	4.44
18	ER4a	ExonRegion	0	0.04	0.00	0.13	0.00	1.42	0.00	0.30
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER5a	ExonRegion	0	6.76	2.56	7.20	0.85	7.05	1.23	5.53
21	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER6a	ExonRegion	0	11.67	11.27	15.93	3.99	10.25	3.29	7.00
23	E6a_E7a	KnownJunction	0	12.33	15.95	15.74	2.22	13.58	5.20	8.81
24	Ix	Intron	0	9.96	8.10	13.02	5.01	11.14	3.00	10.39
25	Ix_AR1	ActiveIntronRegion	0	26.74	7.44	31.96	11.70	22.82	4.88	14.73
26	Ix_SR2	SilentIntronRegion	0	7.55	12.68	14.55	5.16	10.65	4.12	10.36
27	Ix_AR3	ActiveIntronRegion	0	9.68	8.47	13.68	4.35	14.47	3.03	11.63
28	Ix_SR3	SilentIntronRegion	0	8.10	5.99	7.92	3.33	7.55	1.38	9.76
29	Ix_SR4	SilentIntronRegion	0	4.73	7.12	9.04	4.99	7.92	4.43	9.02
30	Ix_AR6	ActiveIntronRegion	0	6.80	8.82	6.53	5.24	11.35	5.35	4.13
31	E7_Aa	NovelBoundary	0	18.84	20.99	23.73	10.38	24.74	14.66	25.71
32	ER7a	ExonRegion	0	51.06	47.91	72.41	13.87	42.58	13.87	28.67
33	E7a_E8a	KnownJunction	0	51.44	53.78	72.28	10.70	34.95	8.60	29.59
34	ER8a	ExonRegion	0	35.84	30.60	44.17	8.34	12.45	7.69	19.70
35	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER9a	ExonRegion	0	13.41	8.56	20.12	3.96	13.27	1.09	7.65
37	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER10a	ExonRegion	0	0.02	0.47	0.70	0.34	0.75	0.00	0.90
39	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00