Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FANCA	Gene	0	3.61	3.52	3.24	3.87	110.32	4.45	9.52
2	389302	Transcript	0	0	0	0	0	0	0	0
3	389301	Transcript	0	4.30	3.98	3.10	4.03	152.13	5.31	11.70
4	305699	Transcript	0	0.00	0.00	0.00	0.00	2.16	0.00	0.00
5	ER1a	ExonRegion	0	0.00	0.00	0.43	0.58	24.11	1.60	0.00
6	E1_Ab	KnownBoundary	0	0.00	0.00	0.73	1.35	66.32	3.11	0.00
7	ER1b	ExonRegion	0	0.00	0.00	1.75	0.90	58.47	2.70	2.39
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	1.04	0.00	1.91
9	ER2a	ExonRegion	0	0.29	0.25	2.75	0.00	27.12	4.96	5.00
10	E2a_E3a	KnownJunction	0	0.97	1.42	6.75	0.00	55.12	5.57	8.84
11	ER3a	ExonRegion	0	1.34	1.80	4.17	2.40	120.81	4.72	8.87
12	E3a_E4a	KnownJunction	0	1.92	0.00	1.34	3.79	86.26	6.86	8.15
13	ER4a	ExonRegion	0	1.50	2.34	2.65	4.67	100.76	5.53	9.34
14	E4a_E5a	KnownJunction	0	2.75	3.86	3.15	4.66	146.80	3.91	8.14
15	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER5a	ExonRegion	0	3.52	4.82	2.62	4.36	181.08	3.63	14.69
17	E5a_E6a	KnownJunction	0	3.44	5.49	0.89	4.12	113.47	1.10	11.04
18	I5	Intron	0	0.67	1.06	1.70	0.54	36.90	1.07	1.38
19	I5_SR1	SilentIntronRegion	0	0.88	0.50	1.61	0.51	36.13	0.67	0.56
20	I5_AR1	ActiveIntronRegion	0	0.44	1.73	1.84	0.59	38.38	1.55	2.34
21	ER6a	ExonRegion	0	5.22	4.35	1.52	1.48	179.69	3.31	12.44
22	E6a_E7a	KnownJunction	0	5.07	1.34	1.95	1.41	199.66	4.18	12.18
23	ER7a	ExonRegion	0	6.90	1.42	4.09	1.88	233.07	1.69	20.03
24	E7a_E8a	KnownJunction	0	5.86	0.00	3.16	2.76	255.40	2.79	15.86
25	ER8a	ExonRegion	0	5.80	0.82	3.87	6.81	235.92	6.03	18.59
26	E8a_E9a	KnownJunction	0	5.41	1.34	4.61	4.09	232.28	5.60	17.24
27	ER9a	ExonRegion	0	5.31	0.71	4.54	4.62	254.36	7.10	18.11
28	E9a_E10a	KnownJunction	0	3.62	0.00	1.39	5.42	241.66	6.19	9.97
29	ER10a	ExonRegion	0	4.99	1.20	2.97	8.77	189.40	4.04	18.60
30	E10a_E11a	KnownJunction	0	0.70	0.00	0.00	3.14	29.99	4.74	2.32
31	E10a_E12a	KnownJunction	0	4.84	1.08	2.79	6.77	140.76	1.21	19.53
32	E10a_E13a	NovelJunction	0	0.00	1.37	0.00	0.00	19.64	1.39	0.54
33	ER11a	ExonRegion	0	1.20	2.04	1.00	1.82	23.04	2.30	2.27
34	ER11b	ExonRegion	0	0.00	0.00	0.00	0.00	4.32	0.00	0.00
35	ER12a	ExonRegion	0	3.17	0.11	3.01	2.88	159.19	5.89	17.35
36	E12a_E13a	KnownJunction	0	2.74	0.00	4.58	1.65	113.26	2.84	12.35
37	ER13a	ExonRegion	0	2.63	0.47	4.66	6.54	169.31	3.71	15.71
38	E13a_E14a	KnownJunction	0	1.99	1.60	2.97	8.86	137.10	5.79	15.31
39	ER14a	ExonRegion	0	2.68	1.03	4.15	3.86	140.11	3.19	12.09
40	E14a_E15a	KnownJunction	0	0.97	0.00	4.87	5.99	202.54	5.84	14.52
41	ER15a	ExonRegion	0	3.16	0.60	3.72	6.65	144.46	5.43	14.60
42	E15a_E16a	KnownJunction	0	3.61	1.08	2.18	0.00	114.23	2.49	15.32
43	ER16a	ExonRegion	0	4.29	0.11	3.02	3.63	151.60	6.72	16.64
44	E16a_E17a	KnownJunction	0	3.97	0.00	2.60	6.01	292.36	5.07	17.96
45	ER17a	ExonRegion	0	2.59	0.52	2.88	4.25	183.30	5.02	15.33
46	E17a_E18a	KnownJunction	0	3.94	1.63	3.32	8.32	198.67	11.15	16.29
47	ER18a	ExonRegion	0	5.02	2.49	2.99	7.84	221.49	8.50	17.25
48	E18a_E19a	KnownJunction	0	5.11	3.26	3.22	5.45	145.62	2.47	14.82
49	ER19a	ExonRegion	0	2.57	2.35	2.14	6.12	134.66	10.76	11.04
50	E19a_E20a	KnownJunction	0	3.62	1.63	2.62	6.37	164.94	8.33	6.28
51	ER20a	ExonRegion	0	2.96	1.89	2.84	7.22	134.62	4.30	10.02
52	E20a_E21a	KnownJunction	0	2.07	1.47	1.58	5.96	101.27	4.18	9.10
53	ER21a	ExonRegion	0	2.61	0.61	2.17	6.23	204.65	3.29	12.95
54	E21a_E22a	KnownJunction	0	1.79	0.00	1.35	4.31	293.32	4.56	9.17
55	ER22a	ExonRegion	0	1.80	0.03	0.29	2.49	129.26	1.57	10.13
56	E22a_E23a	KnownJunction	0	2.47	0.00	0.00	3.25	111.16	0.00	8.51
57	ER23a	ExonRegion	0	0.83	1.13	0.87	2.42	115.93	4.22	7.61
58	E23a_E24a	KnownJunction	0	0.87	1.63	0.73	1.11	100.12	3.99	9.46
59	ER24a	ExonRegion	0	3.14	1.30	1.36	4.71	124.17	7.33	7.90
60	E24a_E25a	KnownJunction	0	0.00	1.60	2.74	5.63	139.29	4.66	9.54
61	ER25a	ExonRegion	0	0.86	0.79	2.26	2.92	115.08	4.63	7.12
62	E25a_E26a	KnownJunction	0	1.69	0.00	0.00	1.22	73.58	2.92	6.06
63	I25	Intron	0	0.71	1.52	1.68	0.92	28.42	3.04	0.84
64	I25_AR1	ActiveIntronRegion	0	0.71	1.53	1.69	0.92	28.61	3.06	0.84
65	ER26a	ExonRegion	0	4.22	0.98	0.94	0.93	117.94	5.22	6.15
66	E26a_E27a	KnownJunction	0	3.72	0.00	0.00	3.28	115.47	8.39	5.72
67	ER27a	ExonRegion	0	3.55	1.62	2.23	4.52	144.80	8.67	11.79
68	E27a_E28a	KnownJunction	0	3.57	1.42	3.29	2.28	140.44	10.72	9.19
69	ER28a	ExonRegion	0	2.78	0.66	3.45	4.17	161.75	8.91	12.50
70	E28a_E29a	KnownJunction	0	2.59	0.00	2.01	3.79	134.51	9.89	9.87
71	ER29a	ExonRegion	0	3.58	6.95	3.75	4.55	163.59	4.85	16.21
72	E29a_E30a	KnownJunction	0	4.81	9.06	3.79	3.03	194.66	1.98	11.92
73	ER30a	ExonRegion	0	3.00	5.91	3.47	3.62	173.02	2.77	14.75
74	E30a_E31a	KnownJunction	0	1.70	7.28	3.06	1.68	135.87	6.19	14.99
75	E30a_E32a	NovelJunction	0	0.85	0.00	0.00	3.36	36.08	0.00	3.65
76	ER31a	ExonRegion	0	3.01	4.70	2.94	2.22	151.22	6.13	14.23
77	E31a_E32a	KnownJunction	0	2.97	4.89	5.39	4.42	135.30	9.14	11.11
78	ER32a	ExonRegion	0	2.75	10.02	3.82	4.69	181.26	7.85	15.24
79	E32a_E33a	KnownJunction	0	3.35	6.75	1.52	3.55	146.89	4.98	18.16
80	ER33a	ExonRegion	0	4.61	7.61	2.27	3.47	168.16	6.26	13.14
81	E33a_E34a	KnownJunction	0	3.17	8.20	2.77	1.03	263.77	4.82	16.41
82	ER34a	ExonRegion	0	6.69	7.63	2.31	3.91	142.40	6.76	12.98
83	E34a_E35a	KnownJunction	0	5.31	7.22	2.07	2.52	111.81	8.39	10.58
84	E35_Aa	NovelBoundary	0	0.82	7.78	0.00	6.42	2.28	12.11	2.36
85	ER35a	ExonRegion	0	4.89	7.78	2.43	1.37	132.87	5.09	8.54
86	E35a_E36a	KnownJunction	0	3.74	4.31	1.57	1.63	114.83	3.64	7.65
87	ER36a	ExonRegion	0	7.87	5.10	3.59	5.90	132.64	5.98	12.87
88	E36a_E37a	KnownJunction	0	4.77	4.10	1.28	0.00	92.51	3.11	7.62
89	ER37a	ExonRegion	0	4.60	4.71	2.47	5.36	124.82	7.45	8.12
90	E37a_E38a	KnownJunction	0	11.33	0.00	3.31	1.65	177.41	3.83	10.15
91	ER38a	ExonRegion	0	9.43	11.20	6.28	4.75	145.41	5.90	10.44
92	E38a_E39a	KnownJunction	0	13.03	11.51	4.33	2.98	192.93	3.86	15.05
93	E39_Aa	NovelBoundary	0	25.79	21.28	22.36	17.47	4.24	17.80	16.81
94	ER39a	ExonRegion	0	11.88	13.07	3.25	4.08	226.73	6.60	15.04
95	E39_Da	NovelBoundary	0	8.48	21.52	14.37	11.68	2.07	18.81	9.53
96	E39a_E40a	KnownJunction	0	6.34	15.40	1.87	5.96	182.03	5.44	9.36
97	I39	Intron	0	26.68	22.85	36.44	25.78	6.67	16.45	21.70
98	I39_SR1	SilentIntronRegion	0	9.48	13.11	11.14	14.79	2.23	10.71	8.97
99	I39_AR1	ActiveIntronRegion	0	36.69	28.55	51.12	32.22	9.25	19.85	29.13
100	E40_Aa	NovelBoundary	0	48.63	41.56	73.75	59.84	19.09	27.34	44.67
101	ER40a	ExonRegion	0	22.57	23.74	30.37	22.56	177.62	10.44	19.54
102	E40_Da	NovelBoundary	0	57.98	43.19	76.77	61.04	32.07	44.57	45.86
103	E40a_E41a	KnownJunction	0	6.91	6.94	4.54	1.68	180.94	3.30	7.90
104	I40	Intron	0	19.99	13.11	25.46	10.28	11.23	2.99	13.34
105	I40_AR1	ActiveIntronRegion	0	20.27	13.36	25.94	10.44	11.45	3.04	13.58
106	E41_Aa	NovelBoundary	0	22.11	27.69	28.94	41.99	19.94	17.15	35.14
107	ER41a	ExonRegion	0	3.94	5.13	3.18	1.41	149.93	2.39	10.70
108	E41_Da	NovelBoundary	0	36.57	25.64	41.13	50.17	16.67	30.82	32.73
109	E41a_E42a	KnownJunction	0	4.69	5.39	2.64	1.65	177.97	4.26	10.72
110	E42_Aa	NovelBoundary	0	38.54	45.11	46.56	41.37	23.49	24.39	36.10
111	ER42a	ExonRegion	0	4.04	3.47	2.42	0.84	119.38	3.53	6.93
112	E42_Da	NovelBoundary	0	37.45	30.71	44.82	41.86	19.02	13.96	25.27
113	E42a_E43a	KnownJunction	0	6.33	3.91	2.72	0.00	178.27	4.21	8.76
114	E43_Aa	NovelBoundary	0	64.97	31.45	81.84	54.70	19.69	43.87	33.38
115	ER43a	ExonRegion	0	5.32	7.69	2.19	0.68	115.73	4.24	7.20
116	E43_Da	NovelBoundary	0	49.62	46.97	71.41	42.21	20.93	35.38	29.59
117	E43a_E44a	KnownJunction	0	5.94	6.73	1.57	3.06	152.77	3.27	6.43
118	E44_Aa	NovelBoundary	0	35.25	35.26	49.45	32.18	18.44	17.29	30.44
119	ER44a	ExonRegion	0	2.66	3.16	3.50	3.78	27.14	1.93	4.37