Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KLHDC4	Gene	0	25.22	35.56	32.13	42.22	59.54	19.77	37.40
2	316853	Transcript	0	2.55	3.09	1.86	1.54	3.34	1.50	1.80
3	347925	Transcript	0	8.14	12.98	9.44	10.65	0.00	4.53	7.85
4	270583	Transcript	0	0	0	0	0	0	0	0
5	353170	Transcript	0	0.58	0.00	1.01	0.00	0.00	1.66	0.00
6	IG43_AR8	ActiveIntergenicRegion	0	6.48	2.72	3.48	4.51	0.41	4.43	12.22
7	IG43_SR5	SilentIntergenicRegion	0	2.92	1.38	0.82	1.97	0.04	1.30	8.13
8	IG43_AR7	ActiveIntergenicRegion	0	4.04	1.04	0.08	3.39	0.37	1.02	15.62
9	IG43_AR6	ActiveIntergenicRegion	0	1.01	1.55	0.40	3.80	0.00	0.00	7.88
10	IG43_AR5	ActiveIntergenicRegion	0	0.34	1.62	0.27	2.42	0.00	0.00	10.87
11	ER1a	ExonRegion	0	14.97	22.53	18.91	38.68	46.52	12.26	27.59
12	E1a_E2a	KnownJunction	0	11.08	32.84	13.77	33.16	8.14	22.38	21.86
13	E1a_E4a	KnownJunction	0	0.58	0.00	1.01	0.00	0.00	1.66	0.00
14	ER2a	ExonRegion	0	26.41	40.87	41.12	69.08	41.49	23.51	48.91
15	E2a_E3a	KnownJunction	1	23.53	17.68	37.09	45.22	79.97	15.28	48.25
16	E2a_E4a	NovelJunction	1	5.64	5.88	10.94	18.61	9.73	1.15	2.26
17	ER3a	ExonRegion	0	26.38	35.29	31.67	37.16	122.03	28.28	52.16
18	E3a_E4a	KnownJunction	0	17.67	16.03	23.52	20.89	48.04	26.93	23.15
19	E4_Aa	NovelBoundary	0	13.03	5.33	4.86	2.57	4.43	0.00	6.56
20	ER4a	ExonRegion	0	25.41	26.97	39.30	36.77	67.90	21.97	42.23
21	E4a_E5a	KnownJunction	0	31.16	23.64	38.40	41.91	60.44	13.05	47.14
22	ER5a	ExonRegion	0	38.88	43.77	54.15	49.70	84.67	23.34	51.09
23	E5_Da	NovelBoundary	1	0.72	8.41	12.36	5.04	0.88	0.00	6.92
24	E5a_E6a	KnownJunction	0	18.79	25.06	35.77	33.16	69.87	15.20	54.33
25	E5a_E7a	KnownJunction	0	8.14	12.98	9.44	10.65	0.00	4.53	7.85
26	I5	Intron	0	12.21	3.03	13.98	2.75	2.03	1.26	6.97
27	I5_AR2	ActiveIntronRegion	0	13.24	4.03	16.18	3.83	2.19	0.88	8.10
28	I5_AR3	ActiveIntronRegion	0	16.36	0.00	16.35	1.25	3.24	0.00	8.77
29	I5_SR2	SilentIntronRegion	0	12.91	2.97	16.99	2.75	2.46	1.72	7.32
30	I5_AR4	ActiveIntronRegion	0	15.26	3.08	14.04	0.00	4.28	3.42	10.02
31	I5_SR3	SilentIntronRegion	0	17.00	3.10	16.46	3.09	2.22	1.18	7.29
32	I5_AR5	ActiveIntronRegion	0	11.69	5.62	16.04	1.79	2.18	1.04	6.59
33	I5_SR4	SilentIntronRegion	0	9.44	4.26	13.33	4.22	1.60	2.09	6.81
34	I5_AR10	ActiveIntronRegion	0	30.01	2.83	22.71	2.87	2.72	0.00	12.71
35	E6_Aa	NovelBoundary	0	32.33	3.78	20.52	3.96	0.00	1.21	20.81
36	ER6a	ExonRegion	0	40.31	43.96	51.01	54.56	111.19	21.40	58.92
37	E6_Da	NovelBoundary	1	12.28	2.86	14.83	2.90	1.11	0.00	2.84
38	E6a_E7a	KnownJunction	0	39.17	38.04	46.93	55.97	131.49	17.82	57.61
39	ER7a	ExonRegion	0	36.40	48.04	44.40	60.83	81.48	27.32	48.95
40	E7a_E8a	KnownJunction	0	34.73	52.57	46.32	74.72	102.38	24.66	52.48
41	ER8a	ExonRegion	0	30.48	53.15	43.65	76.39	90.55	26.57	56.31
42	E8a_E9a	KnownJunction	0	24.67	48.63	40.88	52.31	79.99	27.82	62.01
43	ER9a	ExonRegion	0	29.70	48.84	39.93	54.18	61.56	26.36	46.09
44	E9_Da	NovelBoundary	1	4.37	5.46	16.74	9.81	5.81	0.00	0.87
45	E9a_E10a	KnownJunction	0	23.12	41.90	23.08	33.38	49.98	12.01	39.80
46	E9a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	I9	Intron	1	4.77	3.87	12.18	3.22	3.59	1.18	2.93
48	I9_AR1	ActiveIntronRegion	1	5.11	4.52	13.06	2.78	3.77	1.34	3.12
49	ER10a	ExonRegion	0	24.42	34.70	23.96	35.52	51.96	17.29	32.18
50	E10a_E11a	KnownJunction	0	28.29	34.02	31.34	31.53	56.59	26.10	38.42
51	E11_Aa	NovelBoundary	0	0.00	9.51	6.01	16.47	0.00	9.11	0.00
52	ER11a	ExonRegion	0	20.89	32.37	27.60	33.76	41.45	23.20	30.71
53	E11a_E12a	KnownJunction	0	10.41	21.20	21.58	23.08	15.58	12.17	15.45
54	E11a_E12b	KnownJunction	0	5.11	6.17	3.72	3.09	6.69	3.00	3.60
55	ER12a	ExonRegion	0	11.33	21.56	25.40	23.07	22.68	14.71	16.53
56	ER12b	ExonRegion	0	12.63	20.84	19.47	19.04	18.17	8.92	12.14
57	E12_Da	KnownBoundary	1	1.77	12.48	3.19	7.45	5.14	4.31	10.32
58	ER12c	ExonRegion	0	4.11	11.15	4.31	4.62	12.76	5.29	5.92
59	IG42	Intergenic	0	7.10	3.36	13.73	6.12	8.57	1.69	4.80
60	IG42_AR2	ActiveIntergenicRegion	0	9.71	2.68	18.21	5.57	10.15	2.00	5.18
61	IG42_SR1	SilentIntergenicRegion	0	6.99	8.84	18.01	15.99	8.57	3.08	8.05
62	IG42_AR1	ActiveIntergenicRegion	0	8.62	10.39	22.37	22.88	15.58	3.44	11.46