Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FAM38A	Gene	0	213.74	345.05	271.97	524.54	51.09	250.16	328.08
2	301015	Transcript	0	211.23	343.99	282.51	517.54	47.25	236.14	331.32
3	358442	Transcript	0	1.15	1.98	1.75	1.81	1.37	1.45	2.55
4	327397	Transcript	1	155.00	45.94	143.76	119.49	18.78	43.18	11.72
5	IG6	Intergenic	0	45.52	65.03	59.81	104.17	18.20	23.13	86.36
6	IG6_AR1	ActiveIntergenicRegion	0	82.92	121.14	107.36	195.11	34.16	43.04	159.52
7	ER1a	ExonRegion	0	159.73	406.39	216.92	543.63	43.36	169.73	394.92
8	E1a_E2a	KnownJunction	0	216.64	414.69	316.48	601.34	61.18	199.63	386.02
9	ER2a	ExonRegion	0	196.53	390.54	284.75	580.34	39.60	179.19	315.99
10	E2a_E3a	KnownJunction	0	183.52	378.89	266.81	540.09	55.21	192.69	298.82
11	E3_Aa	NovelBoundary	1	66.16	0.00	95.03	1.46	0.00	1.13	0.64
12	ER3a	ExonRegion	0	300.64	441.96	426.00	667.57	70.16	233.89	457.11
13	E3a_E4a	KnownJunction	0	276.52	438.47	399.94	709.41	54.17	263.60	480.22
14	ER4a	ExonRegion	0	301.88	449.57	422.03	743.13	69.16	268.27	501.91
15	E4a_E5a	KnownJunction	0	267.02	390.26	374.52	592.13	46.87	239.21	464.12
16	ER5a	ExonRegion	0	224.48	361.14	306.82	593.48	46.24	196.47	405.66
17	E5a_E6a	KnownJunction	0	179.50	279.29	204.33	429.10	23.31	148.74	284.99
18	ER6a	ExonRegion	0	83.46	213.51	99.97	348.29	13.04	103.13	106.90
19	E6a_E7a	KnownJunction	0	138.76	223.54	187.92	421.84	9.68	119.71	158.41
20	ER7a	ExonRegion	0	116.11	284.87	181.64	451.46	25.62	138.41	169.69
21	E7a_E8a	KnownJunction	0	262.15	415.14	420.71	705.78	52.38	218.85	408.47
22	ER8a	ExonRegion	0	224.92	387.64	364.31	574.31	45.29	216.69	367.78
23	E8_Da	NovelBoundary	1	52.37	115.28	77.97	226.54	7.93	86.51	26.10
24	E8a_E9a	KnownJunction	0	187.59	261.19	283.84	297.84	38.31	102.94	376.53
25	I8	Intron	0	33.16	103.44	54.61	155.41	4.73	92.11	17.85
26	I8_AR1	ActiveIntronRegion	0	38.18	113.52	65.14	171.26	5.28	99.40	19.80
27	I8_AR2	ActiveIntronRegion	0	24.10	85.57	35.45	127.28	3.76	79.42	14.36
28	E9_Aa	NovelBoundary	1	41.46	96.73	76.18	192.21	10.74	140.27	27.42
29	ER9a	ExonRegion	0	224.01	325.94	358.09	410.93	46.95	201.47	312.83
30	E9a_E10a	KnownJunction	0	269.79	350.12	397.20	461.74	52.54	274.51	312.34
31	ER10a	ExonRegion	0	164.65	240.09	233.25	375.97	31.06	178.44	201.62
32	E10a_E11a	KnownJunction	0	268.96	304.70	413.51	505.33	45.97	217.69	327.57
33	ER11a	ExonRegion	0	193.09	308.76	284.14	479.79	44.05	175.99	284.33
34	E11a_E13a	KnownJunction	0	241.45	271.46	319.21	393.74	37.74	156.62	293.81
35	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.06	0.00	0.00
36	E12a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER13a	ExonRegion	0	264.62	287.76	339.99	448.40	43.34	232.33	289.66
38	E13a_E14a	KnownJunction	0	171.79	238.94	227.60	358.36	33.91	189.88	210.70
39	ER14a	ExonRegion	0	142.06	241.49	171.52	379.98	31.99	196.49	188.42
40	E14a_E15a	KnownJunction	0	255.67	306.46	319.94	413.74	64.89	218.02	285.47
41	E15_Aa	NovelBoundary	1	84.87	6.96	108.38	3.36	1.13	2.84	3.02
42	ER15a	ExonRegion	0	220.50	354.01	282.76	525.51	49.47	234.65	370.64
43	E15a_E16a	KnownJunction	0	248.86	411.88	344.50	635.23	69.09	284.88	498.93
44	ER16a	ExonRegion	0	251.83	420.53	333.21	666.34	61.05	296.62	455.88
45	E16a_E17a	KnownJunction	0	231.94	446.19	320.19	628.46	48.11	290.13	424.32
46	ER17a	ExonRegion	0	194.77	357.61	279.07	569.01	47.75	257.64	372.85
47	E17a_E18a	KnownJunction	0	157.45	330.18	249.64	490.81	27.62	216.17	255.36
48	ER18a	ExonRegion	0	157.66	291.58	237.99	428.10	36.88	183.55	233.69
49	E18a_E19a	KnownJunction	0	142.63	266.47	239.05	398.86	41.33	185.35	245.05
50	ER19a	ExonRegion	0	102.07	206.61	143.55	305.75	22.89	152.31	167.42
51	E19a_E20a	KnownJunction	0	78.36	146.88	93.49	208.85	8.23	115.05	135.35
52	E19a_E22a	NovelJunction	0	1.44	7.36	6.77	21.81	2.21	12.57	2.38
53	ER20a	ExonRegion	0	67.06	159.47	86.31	231.80	12.65	112.86	118.89
54	E20a_E22a	KnownJunction	0	93.93	205.71	152.28	284.05	21.88	136.92	208.49
55	E21_Aa	NovelBoundary	0	1260.14	840.11	766.69	568.37	292.22	521.63	638.36
56	ER21a	ExonRegion	0	1.67	0.00	2.49	0.00	4.67	0.00	0.00
57	E21_Da	NovelBoundary	0	1810.72	1099.54	1374.54	995.22	675.63	882.95	1382.06
58	E21a_E30b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	ER22a	ExonRegion	0	116.78	289.95	173.67	369.90	27.13	165.36	219.32
60	E22a_E23a	KnownJunction	0	144.80	335.85	163.28	404.23	35.27	183.07	237.92
61	ER23a	ExonRegion	0	128.34	349.24	158.85	471.25	40.30	183.69	286.03
62	E23a_E24a	KnownJunction	0	177.91	423.94	228.32	534.78	47.24	244.09	343.19
63	ER24a	ExonRegion	0	159.48	347.83	214.73	517.27	46.55	222.01	304.49
64	E24a_E25a	KnownJunction	0	190.38	306.67	222.58	466.75	42.46	208.82	305.83
65	ER25a	ExonRegion	0	188.28	339.03	212.82	478.22	52.28	208.14	334.53
66	E25a_E26a	KnownJunction	0	216.62	327.76	210.14	490.57	43.50	247.17	305.98
67	E26_Aa	NovelBoundary	0	85.10	124.76	90.09	229.41	10.33	96.51	126.09
68	ER26a	ExonRegion	0	153.77	321.43	210.29	468.95	35.72	223.21	258.31
69	E26a_E27a	KnownJunction	0	90.91	309.82	120.25	462.17	26.70	207.46	165.34
70	ER27a	ExonRegion	0	119.06	297.12	144.69	453.10	30.92	202.84	198.17
71	E27a_E28a	KnownJunction	0	131.45	260.93	177.07	435.71	39.37	129.76	228.54
72	ER28a	ExonRegion	0	174.06	314.15	200.13	497.60	41.26	197.38	282.98
73	E28a_E29a	KnownJunction	0	195.62	390.13	212.75	579.10	34.26	254.30	333.58
74	ER29a	ExonRegion	0	260.27	463.66	303.80	675.95	55.56	319.82	428.64
75	E29a_E30a	KnownJunction	0	204.67	428.75	330.39	591.59	41.93	328.24	393.96
76	ER30a	ExonRegion	0	211.27	400.00	310.57	581.13	36.38	304.55	289.15
77	E30a_E44a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	ER30b	ExonRegion	0	126.98	309.79	215.24	403.08	36.44	231.71	174.72
79	ER30c	ExonRegion	0	131.09	306.90	210.31	453.12	28.85	244.62	202.52
80	E30b_E31a	KnownJunction	0	197.33	341.19	310.46	566.45	21.92	298.07	303.70
81	E30b_E32a	NovelJunction	1	12.32	41.30	9.00	26.50	1.18	13.02	49.27
82	ER31a	ExonRegion	0	220.17	326.90	320.68	492.88	47.04	255.85	269.15
83	E31a_E32a	KnownJunction	0	261.51	344.84	377.49	509.50	52.10	258.83	365.01
84	ER32a	ExonRegion	0	385.14	465.27	493.32	691.58	82.30	349.25	536.39
85	E32a_E33a	KnownJunction	0	514.57	453.50	613.94	676.95	115.15	359.01	621.84
86	ER33a	ExonRegion	0	344.43	360.38	397.45	610.40	66.15	320.78	525.24
87	E33a_E34a	KnownJunction	0	362.24	456.49	490.59	772.67	95.69	392.19	627.29
88	E33a_E35a	NovelJunction	0	0.00	1.63	1.58	3.36	0.00	10.67	0.00
89	ER34a	ExonRegion	0	218.80	349.73	274.80	561.39	62.64	295.94	386.27
90	E34a_E35a	KnownJunction	0	385.04	473.65	471.35	736.55	75.91	455.65	449.73
91	ER35a	ExonRegion	0	334.03	385.34	384.69	590.47	93.63	391.65	502.09
92	E35_Da	NovelBoundary	0	64.11	67.75	79.22	38.82	7.45	18.65	33.09
93	E35a_E36a	NovelJunction	1	220.79	84.83	216.17	268.77	0.00	85.87	3.08
94	E35a_E37a	KnownJunction	0	291.47	407.79	403.00	575.44	116.79	450.18	641.53
95	E36_Aa	NovelBoundary	1	637.61	51.83	448.71	51.99	61.74	27.93	75.40
96	ER36a	ExonRegion	1	266.42	67.77	222.06	169.99	35.85	57.62	18.86
97	E36_Da	NovelBoundary	1	649.86	155.08	530.35	376.59	41.70	118.99	77.85
98	E36a_E37a	KnownJunction	1	196.56	68.96	206.23	179.91	19.32	67.16	11.85
99	I36	Intron	0	84.46	44.08	93.70	26.21	13.71	14.47	46.58
100	I36_AR1	ActiveIntronRegion	0	85.19	44.42	94.48	26.41	13.84	14.57	46.95
101	E37_Aa	NovelBoundary	0	69.08	34.21	88.22	43.48	19.20	14.95	42.01
102	ER37a	ExonRegion	0	459.97	559.38	586.47	829.19	117.37	548.86	706.54
103	E37a_E38a	KnownJunction	0	390.86	492.90	492.51	667.20	78.06	441.42	616.38
104	ER38a	ExonRegion	0	302.71	414.06	376.87	660.33	99.01	422.20	494.94
105	E38a_E39a	KnownJunction	0	200.71	328.52	277.06	551.39	70.50	360.43	385.89
106	ER39a	ExonRegion	0	244.57	387.17	308.62	555.50	74.51	374.36	392.38
107	E39a_E40a	KnownJunction	0	212.75	417.30	296.13	630.63	65.93	377.66	325.18
108	ER40a	ExonRegion	0	227.39	416.27	277.45	605.96	78.16	348.11	350.62
109	E40a_E41a	KnownJunction	0	224.15	427.25	331.93	614.86	116.44	370.88	395.85
110	ER41a	ExonRegion	0	222.46	347.01	251.40	592.14	68.11	339.80	281.09
111	E41a_E42a	KnownJunction	0	244.09	343.45	229.24	631.76	76.33	337.78	293.64
112	ER42a	ExonRegion	0	294.28	413.55	263.18	662.02	84.72	368.63	306.01
113	E42_Da	KnownBoundary	0	337.25	486.57	286.54	747.71	81.91	436.11	371.64
114	E42a_E43a	KnownJunction	0	2.02	1.08	2.97	8.56	1.18	4.74	4.46
115	ER42b	ExonRegion	0	297.26	479.10	273.79	786.67	75.04	441.04	373.17
116	E42b_E43a	KnownJunction	0	305.39	467.76	293.74	807.37	77.25	452.09	370.32
117	ER43a	ExonRegion	0	231.05	395.35	208.56	626.62	62.98	381.21	303.11
118	E43_Da	NovelBoundary	0	68.63	193.57	73.43	246.42	24.51	173.74	117.25
119	I43	Intron	1	40.62	78.38	40.10	138.90	14.30	92.56	81.00
120	I43_AR1	ActiveIntronRegion	1	41.41	79.82	40.89	141.51	14.58	94.31	82.53
121	E44_Aa	NovelBoundary	1	212.30	80.57	169.70	80.98	42.23	29.24	52.67
122	ER44a	ExonRegion	0	0.40	2.47	2.11	2.04	1.18	1.23	2.90
123	E44_Da	NovelBoundary	0	54.29	43.01	85.86	30.10	14.68	26.45	43.54
124	E44a_E45a	KnownJunction	0	6.44	10.51	7.40	10.78	3.16	9.65	13.63
125	E45_Aa	NovelBoundary	0	241.12	158.26	195.45	127.25	19.48	93.08	145.01
126	ER45a	ExonRegion	0	0.66	2.85	1.96	1.62	1.87	0.76	3.84