Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C16orf7	Gene	0	30.61	26.71	33.62	26.90	13.97	18.46	31.20
2	389386	Transcript	0	28.09	24.26	16.33	26.78	7.93	16.76	35.46
3	397896	Transcript	1	20.08	10.62	56.38	11.17	21.38	5.07	12.90
4	261625	Transcript	1	10.57	4.49	19.60	5.55	0.00	0.83	6.53
5	ER1a	ExonRegion	0	12.76	11.14	8.67	20.79	0.89	10.28	14.53
6	E1a_E2d	KnownJunction	0	41.67	20.57	29.01	33.13	2.35	21.76	29.97
7	I1	Intron	1	15.54	6.20	37.04	6.47	4.80	2.58	10.42
8	I1_SR2	SilentIntronRegion	1	9.56	3.71	18.20	3.53	2.59	1.75	5.51
9	I1_AR3	ActiveIntronRegion	1	17.48	8.13	34.63	4.85	5.39	3.54	13.46
10	I1_SR3	SilentIntronRegion	1	27.00	10.20	49.36	8.73	13.17	1.14	25.50
11	I1_AR4	ActiveIntronRegion	1	20.64	7.81	52.95	7.99	5.50	4.61	13.01
12	I1_SR4	SilentIntronRegion	1	19.28	6.69	52.90	10.29	6.68	1.47	11.27
13	E2_Aa	NovelBoundary	1	36.42	9.38	90.42	18.04	15.72	4.21	9.77
14	ER2a	ExonRegion	1	25.02	11.70	92.51	13.37	15.92	2.32	16.00
15	E2_Ab	KnownBoundary	1	7.79	10.43	50.34	13.84	18.97	2.95	16.25
16	ER2b	ExonRegion	1	13.72	12.41	58.08	10.64	17.99	1.57	14.77
17	E2_Da	KnownBoundary	1	2.75	5.65	18.06	0.00	6.75	0.00	8.36
18	E2a_E2c	KnownJunction	1	15.04	4.49	35.85	3.28	0.00	0.00	4.73
19	E2_Ac	KnownBoundary	1	14.37	2.99	31.03	5.77	7.38	1.23	3.12
20	ER2c	ExonRegion	1	17.37	10.93	64.49	11.22	13.77	1.23	13.22
21	ER2d	ExonRegion	1	13.29	7.19	51.82	12.82	18.59	2.91	13.19
22	E2_Ad	KnownBoundary	1	15.29	11.30	55.25	19.91	13.85	1.39	8.61
23	ER2e	ExonRegion	0	69.19	36.41	74.42	46.52	10.25	24.80	44.34
24	E2_Db	NovelBoundary	1	12.17	6.41	39.09	11.54	12.19	0.00	5.23
25	E2b_E3a	KnownJunction	0	59.68	34.52	39.55	36.22	1.96	26.13	42.51
26	I2	Intron	1	15.18	15.78	55.70	16.77	20.77	2.52	23.60
27	I2_AR2	ActiveIntronRegion	1	18.21	11.99	63.14	16.97	19.14	4.24	16.77
28	I2_SR2	SilentIntronRegion	1	22.88	12.97	94.29	24.24	27.02	4.17	27.89
29	I2_AR3	ActiveIntronRegion	1	17.64	24.32	66.70	22.33	27.12	2.19	35.84
30	I2_SR3	SilentIntronRegion	1	4.73	8.59	16.94	5.50	12.84	0.00	14.53
31	I2_AR4	ActiveIntronRegion	1	3.99	4.27	18.05	4.57	7.55	0.00	7.30
32	E3_Aa	NovelBoundary	1	20.19	27.87	69.27	21.43	10.77	1.66	32.89
33	ER3a	ExonRegion	0	65.70	43.53	67.00	48.58	12.89	35.45	58.41
34	ER3b	ExonRegion	0	66.01	46.66	68.57	57.52	13.54	36.98	52.41
35	E3_Db	NovelBoundary	1	16.39	27.51	84.71	12.65	14.34	1.42	51.69
36	E3b_E4a	KnownJunction	1	96.48	38.75	59.64	52.42	3.80	35.86	44.71
37	I3	Intron	1	1.64	10.48	25.56	6.31	17.26	0.00	17.40
38	I3_AR1	ActiveIntronRegion	1	1.66	10.66	25.94	6.43	17.58	0.00	17.67
39	E4_Aa	NovelBoundary	1	12.03	20.12	92.89	33.48	20.84	1.23	47.92
40	ER4a	ExonRegion	0	69.41	64.82	93.96	58.87	17.73	41.65	65.23
41	E4a_E6a	KnownJunction	0	45.46	50.86	31.59	31.70	2.14	40.79	39.20
42	E5_Aa	NovelBoundary	0	2741.19	1794.50	1867.71	1185.02	369.01	1204.30	1437.11
43	ER5a	ExonRegion	0	17.84	9.23	12.12	8.91	34.44	11.66	9.47
44	E5_Da	NovelBoundary	0	483.94	370.77	398.78	402.63	456.26	366.06	246.89
45	I5	Intron	0	2.51	3.22	6.73	2.33	8.63	0.54	6.39
46	I5_SR1	SilentIntronRegion	0	2.07	1.43	2.60	0.52	7.53	0.32	4.30
47	I5_AR1	ActiveIntronRegion	1	5.08	13.62	30.71	12.80	15.07	1.82	18.53
48	E6_Aa	NovelBoundary	1	23.08	31.76	70.56	12.06	12.33	9.89	49.04
49	ER6a	ExonRegion	0	66.47	57.38	45.80	45.88	3.25	40.06	51.09
50	E6a_E7a	KnownJunction	0	59.00	59.58	39.60	43.91	1.18	40.63	54.26
51	ER7a	ExonRegion	0	36.34	37.95	31.08	35.73	7.03	30.47	43.03
52	E7_Da	NovelBoundary	0	21.61	24.93	16.51	25.57	7.05	13.29	18.67
53	E7a_E8a	KnownJunction	0	26.85	23.20	19.89	26.25	5.09	16.11	38.90
54	I7	Intron	0	10.70	20.86	13.78	14.67	6.25	8.52	11.03
55	I7_SR1	SilentIntronRegion	1	11.12	18.98	7.76	14.30	2.88	9.32	8.87
56	I7_AR1	ActiveIntronRegion	1	10.05	24.76	25.63	15.59	12.86	7.10	15.37
57	E8_Aa	NovelBoundary	1	27.54	36.99	77.47	26.93	11.32	3.89	38.32
58	ER8a	ExonRegion	0	32.04	26.86	20.35	34.16	3.35	32.96	41.47
59	E8_Da	NovelBoundary	1	0.00	13.50	6.11	2.90	2.12	1.23	8.60
60	E8a_E9a	KnownJunction	0	46.67	36.12	32.74	51.66	6.22	47.14	55.62
61	E9_Aa	NovelBoundary	1	1.82	12.61	12.13	7.15	0.92	1.26	6.91
62	ER9a	ExonRegion	0	54.24	52.68	42.61	41.35	12.86	45.45	69.87
63	E9_Da	NovelBoundary	1	6.08	2.47	23.27	1.14	11.25	0.00	7.60
64	E9a_E10a	KnownJunction	0	63.39	54.38	34.47	39.53	5.23	47.62	68.09
65	ER10a	ExonRegion	0	48.07	65.97	32.47	49.75	7.20	44.29	60.31
66	E10a_E11a	KnownJunction	0	39.74	36.18	28.17	42.99	13.09	29.51	37.92
67	ER11a	ExonRegion	0	12.72	21.15	6.61	19.63	3.45	14.40	17.00
68	E11_Da	KnownBoundary	0	4.34	2.81	0.00	7.88	0.95	0.00	5.03
69	E11a_E11b	KnownJunction	0	6.11	4.49	3.35	7.83	0.00	1.66	8.33
70	E11_Ab	KnownBoundary	0	7.21	11.09	2.36	5.12	3.20	2.84	7.61
71	ER11b	ExonRegion	1	14.60	14.58	3.66	15.71	4.37	5.64	19.29
72	ER11c	ExonRegion	0	20.77	20.28	14.14	27.17	8.72	16.73	31.62
73	E11_Db	KnownBoundary	1	25.59	23.85	16.63	34.41	20.49	20.34	45.27
74	ER11d	ExonRegion	1	27.22	23.38	14.96	37.37	12.25	16.12	42.05
75	E11c_E12a	KnownJunction	1	48.13	31.18	19.34	39.34	9.41	14.53	59.02
76	ER12a	ExonRegion	1	33.69	30.77	22.14	47.71	11.87	32.65	57.55
77	E12a_E13a	KnownJunction	1	39.22	29.56	23.24	36.84	9.52	29.21	69.22
78	ER13a	ExonRegion	0	30.51	31.56	17.70	26.18	9.26	21.45	43.89
79	E13a_E14a	KnownJunction	1	28.72	35.02	16.70	31.53	4.84	10.32	34.65
80	ER14a	ExonRegion	0	22.84	20.00	12.85	18.55	8.83	17.31	24.78
81	E14a_E15a	KnownJunction	0	16.19	14.08	10.49	4.28	8.35	10.29	19.00
82	E14a_E16a	NovelJunction	0	3.39	6.73	1.49	6.20	0.00	2.73	8.07
83	ER15a	ExonRegion	1	21.87	21.05	10.77	13.56	8.07	12.27	22.82
84	E15a_E16a	KnownJunction	0	20.16	20.73	14.33	15.20	10.67	13.21	19.66
85	ER16a	ExonRegion	0	35.69	36.04	24.73	34.68	10.31	19.64	40.04