Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PDXDC2	Gene	0	121.98	151.54	78.87	123.75	96.60	117.57	79.56
2	331116	Transcript	0	83.73	114.49	62.66	105.61	50.31	95.95	61.71
3	ER1a	ExonRegion	0	32.22	34.07	15.50	40.47	31.91	30.59	19.66
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER2a	ExonRegion	0	23.67	63.01	13.06	52.76	8.22	45.15	22.76
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER3a	ExonRegion	0	54.84	65.62	29.94	60.02	50.10	52.96	42.17
8	E3a_E4a	KnownJunction	1	42.88	34.73	12.29	11.08	5.30	19.62	18.14
9	I3_AR1	ActiveIntronRegion	0	2.60	15.63	1.75	13.30	2.26	24.53	1.46
10	E4_Aa	NovelBoundary	0	84.77	61.19	38.81	57.95	24.16	63.35	20.74
11	ER4a	ExonRegion	0	97.28	124.88	45.30	77.22	39.80	97.55	38.37
12	E4a_E5a	KnownJunction	0	89.76	127.78	40.12	88.51	11.92	111.54	31.59
13	ER5a	ExonRegion	0	135.06	174.36	74.42	138.93	35.08	155.18	60.08
14	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER6a	ExonRegion	0	75.23	169.52	51.87	112.70	29.03	108.06	54.19
16	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	I6	Intron	0	29.67	8.78	11.84	4.33	2.24	4.25	10.59
18	I6_SR1	SilentIntronRegion	0	24.76	11.08	9.15	4.53	1.89	5.23	10.32
19	I6_AR1	ActiveIntronRegion	0	45.38	7.73	18.64	5.26	2.89	3.72	13.42
20	E7_Aa	NovelBoundary	0	34.36	8.35	15.35	3.03	1.13	3.06	16.94
21	ER7a	ExonRegion	0	65.03	175.54	43.22	104.04	25.92	98.75	58.68
22	E7a_E8a	KnownJunction	0	57.51	169.50	32.72	99.29	37.41	91.47	51.94
23	I7	Intron	0	30.02	7.73	14.32	4.77	3.07	1.56	14.20
24	I7_AR1	ActiveIntronRegion	0	26.81	7.52	14.04	4.66	3.23	1.55	15.36
25	I7_SR1	SilentIntronRegion	0	42.83	8.61	15.57	5.24	2.48	1.62	9.84
26	ER8a	ExonRegion	0	36.13	94.02	28.61	56.14	25.79	50.39	37.47
27	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	I8_AR1	ActiveIntronRegion	0	46.00	10.52	31.38	7.65	7.11	6.24	16.89
29	ER9a	ExonRegion	0	66.88	79.69	38.86	48.75	27.68	84.31	61.17
30	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER10a	ExonRegion	0	45.57	99.35	31.86	51.91	16.49	61.85	48.52
32	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER11a	ExonRegion	0	74.03	145.61	40.10	73.22	25.06	86.64	51.79
34	E11a_E12a	KnownJunction	0	131.62	196.72	68.19	112.27	49.06	107.47	80.74
35	ER12a	ExonRegion	0	73.29	155.28	51.44	95.91	32.49	84.07	61.14
36	E12a_E13a	KnownJunction	0	75.17	163.85	51.88	103.49	39.93	76.16	65.12
37	I12_AR4	ActiveIntronRegion	0	32.04	10.88	16.58	4.82	5.77	3.44	11.64
38	ER13a	ExonRegion	0	86.55	165.65	51.04	102.64	30.71	102.55	75.96
39	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E13a_E17a	NovelJunction	0	0.98	8.70	4.66	13.71	1.18	16.40	0.00
41	I13	Intron	0	37.12	14.64	20.92	7.52	4.96	5.24	13.60
42	I13_SR1	SilentIntronRegion	0	38.25	15.31	21.52	7.85	5.15	5.45	13.97
43	ER14a	ExonRegion	0	82.15	149.73	54.24	87.81	36.89	88.75	74.47
44	E14_Da	NovelBoundary	1	19.73	0.00	21.45	3.12	6.02	0.00	2.88
45	E14a_E15a	KnownJunction	0	57.26	0.00	32.62	0.00	31.10	0.00	43.37
46	E15_Aa	NovelBoundary	1	40.64	0.00	22.69	0.00	1.18	0.00	0.70
47	ER15a	ExonRegion	0	67.03	142.83	38.01	84.12	40.67	99.75	69.48
48	E15a_E16a	KnownJunction	0	30.14	0.00	17.66	1.65	53.41	0.00	31.76
49	E15a_E17a	NovelJunction	1	6.04	4.20	3.56	8.97	0.90	30.79	10.63
50	ER16a	ExonRegion	0	91.47	142.86	55.27	93.45	45.20	115.89	64.75
51	E16a_E17a	KnownJunction	0	62.79	167.53	34.93	100.48	50.58	96.02	85.70
52	I16	Intron	0	36.92	11.70	15.51	4.73	8.50	5.22	8.94
53	I16_SR1	SilentIntronRegion	0	38.44	10.11	16.11	3.50	8.41	3.83	8.20
54	I16_AR1	ActiveIntronRegion	0	29.57	18.15	11.50	10.30	10.22	11.41	8.97
55	E17_Aa	NovelBoundary	0	36.30	14.87	19.10	2.82	4.15	4.42	9.56
56	ER17a	ExonRegion	0	712.78	641.66	658.02	807.57	594.59	608.98	446.19
57	E17_Da	NovelBoundary	0	900.52	468.37	557.11	505.06	327.42	258.86	271.84
58	E17a_E18a	KnownJunction	0	724.84	673.02	747.32	1081.88	328.43	816.27	510.41
59	E17a_E21a	NovelJunction	1	51.32	1.10	33.94	1.54	1.11	1.42	1.26
60	ER18a	ExonRegion	0	257.45	384.79	259.53	495.49	101.46	375.36	223.50
61	E18a_E19a	KnownJunction	0	34.30	65.99	41.86	82.93	29.44	53.73	23.33
62	E18a_E21a	NovelJunction	1	2.44	13.42	8.49	54.97	0.00	29.61	8.81
63	I18	Intron	1	46.09	38.72	19.04	20.29	16.08	20.99	27.57
64	I18_AR2	ActiveIntronRegion	0	19.87	7.81	7.55	1.60	27.19	1.75	6.17
65	I18_SR1	SilentIntronRegion	0	29.52	15.35	15.08	8.39	7.56	11.51	10.86
66	I18_AR3	ActiveIntronRegion	1	30.06	41.91	18.83	16.17	14.96	32.11	33.79
67	I18_SR2	SilentIntronRegion	1	97.22	44.81	23.50	16.96	30.61	15.03	28.02
68	I18_AR4	ActiveIntronRegion	1	23.03	73.05	10.32	26.47	16.01	39.45	37.52
69	I18_SR3	SilentIntronRegion	1	38.03	38.56	18.78	17.90	15.04	18.41	41.75
70	I18_AR5	ActiveIntronRegion	1	45.15	42.04	21.86	35.90	17.29	20.56	40.13
71	I18_SR4	SilentIntronRegion	1	51.57	58.33	23.39	29.68	17.37	31.97	36.18
72	E19_Aa	NovelBoundary	0	68.11	79.26	30.85	32.97	27.66	53.60	45.03
73	ER19a	ExonRegion	0	35.14	44.53	29.59	64.60	41.91	60.54	23.14
74	E19_Da	NovelBoundary	0	173.58	215.14	109.60	136.16	90.85	106.29	164.15
75	E19a_E20a	KnownJunction	0	0.00	5.41	1.47	7.61	2.21	15.22	0.89
76	I19	Intron	1	29.54	42.47	13.39	32.54	23.42	18.35	36.77
77	I19_SR1	SilentIntronRegion	1	29.69	42.70	13.46	32.72	23.55	18.45	36.97
78	E20_Aa	NovelBoundary	1	177.20	159.42	87.11	146.48	128.01	94.84	180.81
79	ER20a	ExonRegion	0	13.29	10.88	7.36	9.11	47.05	7.78	8.01
80	E20a_E21a	KnownJunction	1	2.60	14.08	12.72	40.39	42.33	17.23	2.32
81	ER21a	ExonRegion	1	91.16	129.04	52.59	78.92	74.73	154.07	78.60
82	E21a_E22a	KnownJunction	0	120.80	152.09	73.46	181.40	60.91	189.98	105.78
83	ER22a	ExonRegion	0	93.44	131.92	51.13	106.43	42.53	149.27	95.00
84	E22a_E23a	KnownJunction	0	81.65	99.65	44.85	73.96	29.02	87.55	75.25
85	E23_Aa	NovelBoundary	0	12.45	28.35	4.27	25.44	3.39	49.23	5.30
86	ER23a	ExonRegion	0	89.12	101.86	39.27	74.92	41.71	111.94	66.68
87	E23a_E24a	KnownJunction	0	1.02	6.15	0.00	4.23	0.00	1.21	0.00
88	I23	Intron	1	22.75	28.68	6.66	13.40	7.63	10.48	19.93
89	I23_SR1	SilentIntronRegion	1	22.20	31.38	7.39	13.72	8.64	10.76	23.81
90	I23_AR1	ActiveIntronRegion	1	30.26	40.76	9.05	19.52	10.06	12.74	27.39
91	I23_AR2	ActiveIntronRegion	1	28.70	39.14	10.91	22.25	12.51	25.09	36.66
92	ER24a	ExonRegion	0	9.33	49.88	3.93	37.24	10.39	41.89	10.12
93	E24_Da	NovelBoundary	1	45.33	4.83	11.07	4.39	16.09	5.55	9.47
94	E24a_E25a	KnownJunction	0	26.07	138.11	17.91	105.71	19.16	115.08	28.45
95	E24a_E26a	NovelJunction	1	14.62	12.64	11.01	6.23	1.11	25.06	16.64
96	E25_Aa	NovelBoundary	0	127.43	78.00	59.74	55.89	3.09	64.43	48.84
97	ER25a	ExonRegion	0	189.88	217.86	107.87	159.97	186.32	149.26	104.66
98	E25_Da	NovelBoundary	0	505.62	454.34	263.28	376.84	488.05	337.57	304.80
99	E25a_E26a	KnownJunction	1	53.93	98.54	48.86	146.75	58.46	52.23	41.43
100	E26_Aa	NovelBoundary	0	16.92	82.12	9.64	67.62	20.17	88.71	17.03
101	ER26a	ExonRegion	0	79.76	31.21	44.69	30.05	75.46	21.28	54.66