Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EXOC3L	Gene	0	3.47	0.66	1.18	0.21	3.04	0.51	0.86
2	314586	Transcript	0	0.00	0.38	0.00	0.00	0.45	0.00	0.00
3	314553	Transcript	0	0.73	0.74	0.15	0.47	0.53	0.38	0.84
4	394016	Transcript	0	11.16	0.83	3.74	0.40	7.20	0.80	1.49
5	354375	Transcript	0	0.00	0.00	0.00	0.00	1.06	0.00	0.00
6	ER1a	ExonRegion	0	0.00	0.38	0.00	0.00	0.45	0.00	0.00
7	ER1b	ExonRegion	0	0.57	1.64	0.00	0.00	0.71	0.00	0.00
8	E1_Ac	KnownBoundary	0	1.00	1.37	0.00	0.00	0.00	0.00	0.00
9	ER1c	ExonRegion	0	0.56	0.50	0.00	0.00	2.08	0.00	0.00
10	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
11	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	1.25	0.00	0.00
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E2a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	2.35	0.00	0.00
14	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.10	0.00	0.00
15	ER3b	ExonRegion	0	0.24	0.00	0.00	0.00	1.36	0.00	0.00
16	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	1.04	0.00	0.00
17	E3a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	1.06	0.00	0.00
18	ER4a	ExonRegion	0	0.00	0.00	0.27	0.00	1.53	0.00	0.00
19	E4_Da	KnownBoundary	0	0.77	0.00	0.66	0.00	1.13	0.00	0.00
20	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER4b	ExonRegion	0	0.00	0.01	0.23	0.52	1.15	0.00	0.00
22	E4b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER5a	ExonRegion	0	0.78	0.59	0.33	0.15	2.62	0.76	1.17
24	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER6a	ExonRegion	0	0.31	0.00	0.87	0.00	5.17	0.79	0.87
26	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	7.03	0.00	0.00
27	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER7a	ExonRegion	0	0.81	0.00	0.41	0.00	3.64	0.00	0.00
29	E7a_E8a	KnownJunction	0	1.24	0.00	0.00	0.00	2.10	0.00	0.00
30	ER8a	ExonRegion	0	0.56	0.91	0.00	0.00	3.92	0.00	0.83
31	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	7.10	0.00	0.79
32	ER9a	ExonRegion	0	1.52	1.66	0.00	0.00	7.20	0.00	0.60
33	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
34	ER10a	ExonRegion	0	0.94	2.30	1.19	0.51	3.67	1.45	0.80
35	E10a_E11a	KnownJunction	0	0.00	1.34	0.00	1.46	5.42	0.00	0.00
36	ER11a	ExonRegion	0	1.81	0.75	2.34	0.23	3.70	0.70	2.03
37	E11a_E12a	KnownJunction	0	0.00	1.34	0.83	0.00	4.31	0.00	0.54
38	ER12a	ExonRegion	0	2.89	4.31	0.56	0.00	2.03	1.78	1.79
39	E12_Da	KnownBoundary	0	7.61	3.10	3.25	0.00	1.01	0.00	8.05
40	E12a_E12b	KnownJunction	0	0.00	1.34	0.00	0.00	1.13	0.00	0.00
41	ER12b	ExonRegion	0	1.50	4.46	0.90	2.82	3.09	2.25	5.02
42	E12_Ab	KnownBoundary	0	0.72	2.52	0.00	1.33	5.49	7.91	3.02
43	ER12c	ExonRegion	0	2.13	1.34	0.83	0.76	2.17	2.09	1.86
44	E12b_E13a	KnownJunction	0	0.00	1.08	0.00	1.38	3.07	0.00	0.00
45	ER13a	ExonRegion	0	2.33	1.31	0.00	0.59	1.23	0.62	0.98
46	E13_Da	KnownBoundary	0	1.74	0.00	0.00	1.44	1.18	0.00	0.60
47	E13a_E13b	KnownJunction	0	2.89	0.00	0.00	0.00	0.00	0.00	0.00
48	E13_Ab	KnownBoundary	0	0.98	0.00	0.00	0.00	0.00	0.00	0.00
49	ER13b	ExonRegion	0	3.84	0.00	0.00	1.25	0.81	0.00	0.67
50	ER13c	ExonRegion	0	2.26	0.00	0.00	0.38	0.90	0.00	0.07
51	E13e_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER13d	ExonRegion	0	0.38	0.00	0.00	0.00	0.00	0.00	0.00
53	ER13e	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER13f	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER14a	ExonRegion	0	12.94	1.03	3.30	0.40	5.62	0.88	1.49
56	E14a_E15a	KnownJunction	0	100.84	5.23	29.32	2.47	55.10	5.44	11.28
57	ER15a	ExonRegion	0	54.31	4.34	18.88	2.79	37.54	5.74	9.17
58	E15_Da	NovelBoundary	0	28.19	3.26	11.61	0.00	23.77	1.13	4.03
59	E15a_E16a	KnownJunction	0	12.00	1.10	5.75	1.16	11.64	1.05	1.78
60	ER16a	ExonRegion	0	4.08	0.00	2.01	0.00	3.67	0.43	1.21
61	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER17a	ExonRegion	0	0.68	0.00	1.06	0.00	0.56	0.00	0.00
63	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER18a	ExonRegion	0	1.05	0.36	0.54	0.00	1.26	0.00	0.00
65	E18a_E19a	KnownJunction	0	2.64	1.63	2.39	0.00	4.86	0.00	0.00
66	Ix	Intron	0	11.49	1.89	5.82	1.13	11.57	0.81	2.16
67	Ix_AR1	ActiveIntronRegion	0	11.52	1.90	5.84	1.13	11.59	0.81	2.16
68	ER19a	ExonRegion	0	0.68	0.45	0.10	0.00	1.18	0.00	0.33
69	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
70	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER21a	ExonRegion	0	0.46	0.00	0.23	0.00	0.88	0.00	0.00