Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FHOD1	Gene	0	33.60	40.15	32.46	27.31	68.38	70.50	21.22
2	258201	Transcript	0	36.64	41.54	36.04	25.79	74.94	75.40	21.98
3	ER1a	ExonRegion	0	8.27	17.95	6.95	7.18	11.93	26.93	4.05
4	E1a_E2a	KnownJunction	0	24.02	32.26	22.00	10.89	44.65	48.45	12.05
5	I1_AR2	ActiveIntronRegion	0	2.24	10.48	4.33	6.09	1.39	3.68	2.97
6	ER2a	ExonRegion	0	20.37	33.19	21.54	18.15	55.65	58.77	11.59
7	E2_Da	NovelBoundary	0	3.24	14.58	1.32	14.14	1.18	3.32	2.92
8	E2a_E3a	KnownJunction	0	25.65	30.50	17.24	12.00	50.35	64.05	8.51
9	E2a_E4a	NovelJunction	1	3.47	0.00	0.73	8.07	0.00	11.28	0.00
10	I2	Intron	0	2.35	9.44	4.36	5.74	0.43	3.19	1.88
11	I2_SR1	SilentIntronRegion	0	2.36	9.49	4.38	5.77	0.44	3.20	1.89
12	E3_Aa	NovelBoundary	0	4.51	14.45	6.11	4.01	1.13	9.25	6.49
13	ER3a	ExonRegion	0	29.83	42.91	26.74	16.59	54.45	69.92	11.82
14	E3_Da	NovelBoundary	0	5.36	18.26	4.22	19.78	6.75	11.26	5.10
15	E3a_E4a	KnownJunction	0	34.66	48.44	37.79	20.81	51.36	70.64	19.22
16	I3	Intron	0	6.99	13.69	6.90	8.91	2.38	8.05	4.81
17	I3_AR1	ActiveIntronRegion	0	7.04	13.79	6.94	8.97	2.40	8.10	4.84
18	E4_Aa	NovelBoundary	0	15.02	23.59	24.24	15.60	6.48	17.77	6.32
19	ER4a	ExonRegion	0	33.23	51.26	39.84	19.95	69.25	79.38	16.87
20	E4_Da	NovelBoundary	0	17.37	20.12	18.19	28.20	8.62	24.71	9.65
21	E4a_E5a	KnownJunction	0	25.05	57.90	41.80	21.32	85.30	99.11	15.05
22	E5_Aa	NovelBoundary	0	9.53	20.75	18.57	9.73	10.70	19.38	9.65
23	ER5a	ExonRegion	0	43.71	56.19	49.51	33.88	89.21	120.49	27.03
24	E5_Da	NovelBoundary	0	8.53	19.55	8.23	6.94	5.42	17.98	5.27
25	E5a_E6a	KnownJunction	0	33.88	45.79	34.93	21.92	87.97	107.92	21.50
26	E6_Aa	NovelBoundary	0	9.80	20.20	7.43	14.52	8.32	15.95	8.70
27	ER6a	ExonRegion	0	37.12	56.25	47.45	36.07	88.73	113.88	29.32
28	E6_Da	NovelBoundary	0	5.77	11.93	4.31	6.88	0.00	13.24	6.65
29	E6a_E7a	KnownJunction	0	45.93	55.67	65.13	30.99	88.48	109.32	28.53
30	E7_Aa	NovelBoundary	0	5.14	15.97	6.02	15.98	0.00	4.72	2.48
31	ER7a	ExonRegion	0	44.92	61.55	50.05	38.15	116.01	122.53	35.32
32	E7_Da	NovelBoundary	0	14.42	29.08	14.11	17.77	3.97	23.93	6.03
33	E7a_E8a	KnownJunction	0	39.81	61.00	37.46	23.27	83.22	80.05	34.87
34	E8_Aa	NovelBoundary	0	9.36	16.18	13.13	22.89	4.33	34.92	3.22
35	ER8a	ExonRegion	0	50.00	54.55	53.29	28.65	98.47	98.47	33.51
36	E8_Da	NovelBoundary	0	4.04	5.31	3.65	8.15	1.06	6.65	1.56
37	E8a_E9a	KnownJunction	0	47.57	46.37	40.78	21.24	77.94	80.56	22.56
38	E9_Aa	NovelBoundary	0	9.08	20.15	9.99	21.70	0.00	18.92	4.40
39	ER9a	ExonRegion	0	38.52	59.54	41.78	40.15	79.62	89.30	23.40
40	E9_Da	NovelBoundary	0	3.44	13.24	6.21	8.34	0.00	17.13	4.50
41	E9a_E10a	KnownJunction	0	41.01	40.20	41.36	30.69	77.41	63.76	22.14
42	I9	Intron	0	5.09	8.17	3.86	7.62	0.00	6.76	3.28
43	I9_AR1	ActiveIntronRegion	0	5.15	8.29	3.91	7.74	0.00	6.87	3.32
44	E10_Aa	NovelBoundary	0	2.29	16.92	5.96	13.30	0.00	17.15	4.43
45	ER10a	ExonRegion	0	26.94	38.11	28.47	31.35	40.39	49.57	13.08
46	E10_Da	NovelBoundary	0	0.00	2.47	1.28	9.56	0.00	4.58	4.69
47	E10a_E11a	KnownJunction	0	27.84	24.46	22.00	16.31	26.05	43.44	13.84
48	ER11a	ExonRegion	0	28.66	35.60	29.99	19.35	37.17	53.94	15.41
49	E11a_E12a	KnownJunction	0	34.23	43.37	37.42	30.48	29.00	57.97	22.24
50	E12_Aa	NovelBoundary	0	2.95	17.13	7.95	8.59	3.97	7.40	4.51
51	ER12a	ExonRegion	0	24.91	38.83	28.24	19.19	30.66	69.88	16.32
52	E12_Da	NovelBoundary	0	4.69	17.31	3.16	14.66	3.25	9.51	2.65
53	E12a_E13a	KnownJunction	0	39.52	39.62	32.56	19.37	27.78	65.45	26.74
54	ER13a	ExonRegion	0	26.38	29.30	26.25	17.42	38.99	43.62	18.48
55	E13a_E14a	KnownJunction	0	40.12	34.81	35.37	16.09	74.60	62.07	24.22
56	ER14a	ExonRegion	0	45.57	40.95	40.69	27.47	103.69	63.86	30.18
57	E14_Da	NovelBoundary	0	6.09	15.71	8.00	11.76	7.54	7.34	6.32
58	E14a_E15a	KnownJunction	0	23.97	28.29	38.38	16.72	151.36	52.39	21.20
59	I14	Intron	0	6.43	9.68	8.17	7.76	4.86	9.32	7.00
60	I14_AR1	ActiveIntronRegion	0	6.49	9.77	8.23	7.82	4.90	9.40	7.07
61	E15_Aa	NovelBoundary	0	23.92	15.50	13.34	23.22	9.54	26.53	10.22
62	ER15a	ExonRegion	0	37.09	41.64	41.28	32.65	113.71	69.58	29.84
63	E15_Da	NovelBoundary	1	2.00	16.39	6.50	15.47	0.00	3.08	6.74
64	E15a_E16a	KnownJunction	0	45.00	32.58	54.42	38.82	148.00	79.33	30.30
65	I15	Intron	1	0.67	9.30	4.69	6.49	0.47	1.07	0.57
66	I15_SR1	SilentIntronRegion	1	0.69	9.43	4.80	6.63	0.49	1.10	0.58
67	E16_Aa	NovelBoundary	0	1.74	16.16	8.52	19.72	2.05	14.98	3.81
68	ER16a	ExonRegion	0	55.51	48.35	51.98	44.66	139.06	82.81	30.14
69	E16_Da	NovelBoundary	1	4.26	31.03	9.07	14.87	1.04	9.41	8.20
70	E16a_E17a	KnownJunction	0	35.38	21.83	27.48	21.54	51.36	38.43	16.12
71	E17_Aa	NovelBoundary	0	9.70	16.58	7.47	11.57	9.57	13.27	4.31
72	ER17a	ExonRegion	0	47.85	53.89	46.51	25.25	113.21	62.39	24.92
73	E17_Da	NovelBoundary	0	20.85	11.90	13.49	18.86	5.23	10.37	9.93
74	E17a_E18a	KnownJunction	1	37.67	19.99	33.71	5.77	87.97	46.07	12.38
75	I17	Intron	0	4.75	9.33	4.88	5.88	2.39	4.34	2.77
76	I17_AR3	ActiveIntronRegion	0	5.47	13.26	6.05	7.08	2.30	6.97	3.81
77	E18_Aa	NovelBoundary	0	8.71	12.01	6.47	17.53	7.17	10.13	6.38
78	ER18a	ExonRegion	0	36.39	38.17	22.89	23.65	69.12	62.55	22.45
79	E18a_E19a	KnownJunction	0	43.11	39.77	29.20	33.08	66.74	88.01	27.69
80	ER19a	ExonRegion	0	49.04	41.94	35.39	40.50	106.99	107.08	33.24
81	E19_Da	NovelBoundary	0	1.89	17.21	3.10	6.94	0.00	6.51	1.63
82	E19a_E20a	KnownJunction	0	44.70	41.35	38.24	32.70	78.70	103.74	25.62
83	E20_Aa	NovelBoundary	1	3.55	18.63	5.40	5.45	2.17	2.36	3.08
84	ER20a	ExonRegion	0	42.61	47.65	37.65	30.67	86.33	97.60	25.80
85	E20_Da	NovelBoundary	0	3.49	23.72	7.89	12.46	2.17	8.82	5.86
86	E20a_E21a	KnownJunction	0	56.13	29.71	49.92	21.75	111.18	91.52	28.22
87	E21_Aa	NovelBoundary	0	6.03	10.75	12.32	7.37	3.27	11.71	9.13
88	ER21a	ExonRegion	0	41.97	43.97	34.23	40.85	75.44	92.65	26.36
89	E21_Da	NovelBoundary	0	17.81	22.07	13.45	14.82	6.34	17.31	7.70
90	E21a_E22a	KnownJunction	0	34.35	42.45	24.13	32.81	47.28	75.09	16.64
91	E22_Aa	NovelBoundary	1	7.11	13.71	2.31	9.92	2.24	9.00	8.96
92	ER22a	ExonRegion	0	27.11	37.99	27.47	38.63	57.62	79.54	16.27
93	IG37	Intergenic	0	2.42	14.04	4.14	3.39	0.37	5.84	1.37
94	IG37_SR1	SilentIntergenicRegion	0	2.58	14.83	4.37	3.66	0.40	6.17	1.45