Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NDRG4	Gene	0	12.59	9.47	10.28	6.72	50.13	1.52	9.59
2	258187	Transcript	0	0.68	0.00	0.30	0.00	0.30	0.00	0.89
3	394282	Transcript	0	0.46	0.00	0.57	0.00	1.43	0.00	0.69
4	394279	Transcript	0	0	0	0	0	0	0	0
5	358584	Transcript	0	0.31	1.65	0.01	0.00	0.46	0.00	0.17
6	219312	Transcript	0	0.01	0.00	0.01	0.00	0.01	0.00	0.00
7	356752	Transcript	0	1.54	0.22	0.56	0.36	1.19	0.46	0.29
8	ER1a	ExonRegion	0	0.33	0.00	0.61	0.00	0.59	0.00	0.99
9	E1a_E3a	KnownJunction	0	1.03	0.00	0.00	0.00	0.00	0.00	0.79
10	ER2a	ExonRegion	0	0.02	0.00	0.14	0.00	0.32	0.00	0.52
11	E2a_E3a	KnownJunction	0	0.58	0.00	0.89	0.00	2.35	0.00	0.89
12	ER3a	ExonRegion	0	1.20	0.97	0.82	1.13	3.77	0.63	2.51
13	E3a_E4a	KnownJunction	0	1.03	0.00	1.62	2.98	5.39	1.55	6.49
14	ER4a	ExonRegion	0	2.90	2.32	2.62	1.77	8.51	0.74	5.61
15	E4a_E6a	KnownJunction	0	4.32	4.54	2.44	0.00	5.19	0.00	2.01
16	ER5a	ExonRegion	0	0.00	0.93	0.00	0.00	1.66	0.00	0.00
17	ER6a	ExonRegion	0	7.70	13.11	3.48	4.88	29.39	0.14	6.68
18	E6_Da	KnownBoundary	0	2.17	6.25	0.00	1.25	2.35	1.02	0.83
19	E6a_E7a	KnownJunction	0	4.51	10.46	6.93	10.24	49.24	1.15	7.41
20	ER6b	ExonRegion	0	0.63	3.31	0.01	0.00	0.93	0.00	0.35
21	E6b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER7a	ExonRegion	0	8.62	11.71	11.16	5.71	67.79	3.71	14.71
23	E7a_E8a	KnownJunction	0	7.96	19.83	7.83	7.02	58.67	0.00	12.25
24	ER8a	ExonRegion	0	5.70	9.87	7.89	5.88	47.68	1.13	10.14
25	E8a_E9a	KnownJunction	0	7.19	2.99	7.27	1.52	47.03	3.06	10.13
26	ER9a	ExonRegion	0	7.47	5.36	8.63	4.72	57.67	3.24	14.50
27	E9a_E11b	KnownJunction	0	9.85	13.61	8.82	6.64	61.83	1.13	17.77
28	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.65	0.00	0.00
29	E10a_E11a	KnownJunction	0	0.58	0.00	0.00	0.00	0.00	0.00	0.00
30	E11_Aa	NovelBoundary	0	7339.22	4111.51	4587.04	3826.48	3776.31	3710.91	2991.88
31	ER11a	ExonRegion	0	5.57	0.89	2.23	1.45	4.09	1.82	1.17
32	E11_Ab	KnownBoundary	0	3.47	1.39	4.33	0.00	9.41	1.31	1.38
33	ER11b	ExonRegion	0	10.38	16.73	10.90	6.52	70.53	0.66	15.60
34	E11a_E12a	KnownJunction	0	6.16	13.58	12.47	6.85	65.84	1.29	9.17
35	ER12a	ExonRegion	0	7.81	10.98	8.85	8.23	63.85	1.38	10.50
36	E12a_E13a	KnownJunction	0	7.56	15.63	5.16	10.62	42.69	0.00	8.73
37	ER13a	ExonRegion	0	10.44	15.76	7.06	7.10	57.02	1.25	16.14
38	E13a_E14a	KnownJunction	0	15.05	13.40	8.91	11.49	44.77	1.66	15.03
39	E13a_E20b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER14a	ExonRegion	0	11.67	9.46	7.99	13.06	67.32	2.06	13.28
41	E14a_E15a	KnownJunction	0	8.26	8.04	8.72	9.40	67.11	3.06	7.50
42	ER15a	ExonRegion	0	8.28	12.45	9.87	11.01	69.58	2.22	15.00
43	E15a_E16a	KnownJunction	0	5.04	9.98	9.48	8.99	85.87	0.00	14.13
44	ER16a	ExonRegion	0	8.18	15.87	9.67	6.62	75.72	0.08	15.94
45	E16a_E17a	KnownJunction	0	8.68	12.69	5.93	4.80	66.81	1.05	8.79
46	ER17a	ExonRegion	0	12.72	10.56	11.87	5.06	70.21	0.00	14.05
47	E17a_E18a	KnownJunction	0	9.83	7.12	12.65	4.17	68.74	0.00	11.45
48	ER18a	ExonRegion	0	13.39	7.76	14.20	6.02	71.58	0.78	14.02
49	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E18a_E20a	KnownJunction	0	14.79	9.59	10.09	4.39	53.67	1.66	10.76
51	ER19a	ExonRegion	0	0.04	0.00	0.03	0.00	0.02	0.00	0.00
52	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER20a	ExonRegion	0	17.03	12.28	12.82	10.05	60.95	0.91	10.33
54	E20_Ab	KnownBoundary	0	18.64	5.99	7.72	13.74	54.68	0.00	9.99
55	ER20b	ExonRegion	0	20.32	13.24	17.19	10.08	77.83	2.11	13.71
56	E20_Da	KnownBoundary	0	7.29	7.04	10.73	0.00	22.71	1.23	5.52
57	ER20c	ExonRegion	0	7.92	5.11	4.76	0.92	12.90	2.82	4.17
58	ER20d	ExonRegion	0	0.77	0.00	0.68	0.00	1.62	0.00	0.67
59	IG41	Intergenic	0	4.20	3.15	6.47	3.54	12.03	0.58	3.27
60	IG41_SR1	SilentIntergenicRegion	0	4.22	3.17	6.50	3.55	12.09	0.58	3.28