Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC106782.5	Gene	0	116.42	120.82	96.52	113.74	38.23	76.27	48.78
2	309865	Transcript	0	77.02	80.55	61.32	74.95	26.63	47.17	26.78
3	ER1a	ExonRegion	0	11.26	41.23	9.32	39.48	4.78	33.57	6.76
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER2a	ExonRegion	0	13.29	16.74	11.57	24.35	5.42	17.82	8.15
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER3a	ExonRegion	0	2.90	2.03	6.08	9.89	3.21	2.01	2.12
8	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER4a	ExonRegion	0	20.46	38.29	31.60	49.44	9.39	15.86	13.69
10	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER5a	ExonRegion	0	52.38	104.89	82.48	119.45	17.34	39.69	28.69
12	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER6a	ExonRegion	0	84.27	112.50	95.58	126.95	20.34	47.48	37.63
14	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER7a	ExonRegion	1	353.22	272.92	201.78	271.04	76.06	148.60	53.41
16	E7a_E8a	KnownJunction	0	146.25	376.08	126.14	353.27	123.93	222.17	40.14
17	E7a_E9a	NovelJunction	0	1.42	75.29	2.21	109.91	0.00	100.66	0.00
18	ER8a	ExonRegion	1	445.68	435.95	274.03	388.04	95.98	248.98	87.58
19	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER9a	ExonRegion	1	686.07	514.73	357.33	445.00	130.82	287.56	88.45
21	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	Ix	Intron	1	43.71	5.18	15.67	4.56	3.02	3.48	2.87
23	Ix_SR2	SilentIntronRegion	0	48.50	5.11	16.89	6.33	3.33	3.17	2.42
24	Ix_AR1	ActiveIntronRegion	0	64.96	8.89	23.42	3.62	4.46	6.27	5.70
25	ER10a	ExonRegion	1	440.10	451.54	278.69	384.36	107.61	250.59	91.18
26	E10_Da	NovelBoundary	1	67.99	14.40	23.39	6.94	15.15	9.14	3.78
27	E10a_E11a	KnownJunction	0	312.14	474.36	250.70	385.91	116.49	298.71	79.83
28	E11_Aa	NovelBoundary	1	69.00	17.97	22.96	12.71	9.84	12.03	11.39
29	ER11a	ExonRegion	0	152.39	181.19	123.61	158.88	52.87	122.38	43.26
30	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER12a	ExonRegion	0	10.42	7.43	10.27	16.55	23.67	7.37	12.08
32	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER13a	ExonRegion	0	102.56	220.96	130.27	197.60	53.19	222.20	127.57
34	E13_Da	NovelBoundary	0	547.91	286.91	427.42	313.82	204.76	326.02	212.91
35	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	Ix	Intron	0	64.47	20.87	28.99	18.59	22.30	16.16	13.62
37	Ix_SR1	SilentIntronRegion	0	64.63	20.92	29.06	18.64	22.35	16.20	13.66
38	ER14a	ExonRegion	1	27.11	22.69	40.19	39.56	5.85	11.72	18.71
39	E14_Da	NovelBoundary	1	63.89	12.32	21.81	17.28	22.50	14.82	12.97
40	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER15a	ExonRegion	1	38.95	17.46	39.90	28.55	28.59	5.60	30.62
42	E15_Da	NovelBoundary	0	1107.54	650.09	1154.90	806.85	297.06	449.75	364.00
43	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E16a_E17a	KnownJunction	0	8.85	10.69	11.90	6.23	17.91	10.40	4.77
45	ER16a	ExonRegion	0	7.20	5.57	5.76	3.59	8.33	6.90	5.90
46	ER17a	ExonRegion	0	74.37	48.03	61.03	43.22	31.02	26.77	33.71
47	E17_Da	NovelBoundary	1	40.79	12.01	37.65	2.52	6.43	13.24	5.98
48	E17a_E18a	KnownJunction	0	145.25	92.74	147.47	109.34	56.36	72.06	70.37
49	E18_Aa	NovelBoundary	0	40.91	8.28	22.81	2.41	1.06	1.66	5.98
50	ER18a	ExonRegion	0	141.71	84.89	143.68	91.80	46.85	50.59	70.00
51	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER19a	ExonRegion	0	179.47	83.28	157.96	85.23	49.17	55.18	78.23
53	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER20a	ExonRegion	0	115.59	90.85	96.76	91.84	41.36	48.62	55.32
55	E20a_E21a	KnownJunction	1	6.71	51.26	4.70	29.96	5.72	10.91	6.23
56	E21_Aa	NovelBoundary	0	172.11	144.07	217.16	138.22	67.25	86.13	91.09
57	ER21a	ExonRegion	0	34.85	59.19	31.02	46.62	26.09	25.23	23.17
58	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	Ix	Intron	1	54.04	3.46	22.38	2.96	2.32	4.65	4.10
60	Ix_SR1	SilentIntronRegion	0	54.17	3.47	22.43	2.97	2.32	4.66	4.11
61	E22_Aa	NovelBoundary	1	35.47	1.63	11.94	9.94	1.18	14.87	4.90
62	ER22a	ExonRegion	0	73.98	89.51	64.02	96.71	32.72	39.14	45.92
63	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	Ix	Intron	1	71.06	8.15	25.80	8.89	4.45	8.81	5.45
65	Ix_AR7	ActiveIntronRegion	0	36.16	3.17	19.21	9.36	2.57	2.85	3.70
66	Ix_AR6	ActiveIntronRegion	0	65.11	8.60	32.29	17.96	0.30	9.99	6.56
67	Ix_AR5	ActiveIntronRegion	0	84.01	11.80	38.35	11.68	4.75	10.61	6.97
68	Ix_SR2	SilentIntronRegion	0	58.09	5.85	22.57	8.21	5.54	5.60	5.38
69	Ix_AR3	ActiveIntronRegion	0	104.41	8.41	23.45	9.09	7.04	13.56	6.70
70	Ix_AR2	ActiveIntronRegion	0	77.06	5.54	16.60	10.99	5.35	14.91	5.58
71	Ix_AR1	ActiveIntronRegion	0	74.94	5.36	24.04	2.81	3.36	4.58	3.83
72	ER23a	ExonRegion	0	106.01	140.97	112.44	133.15	69.49	61.91	78.63
73	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
74	ER24a	ExonRegion	0	113.69	127.61	138.12	103.57	45.32	60.51	75.56
75	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	Ix_SR2	SilentIntronRegion	0	27.63	3.77	10.69	1.75	1.69	2.45	3.98
77	ER25a	ExonRegion	0	79.48	71.70	102.17	74.05	43.42	40.78	51.78
78	E25a_E26a	KnownJunction	0	128.48	76.66	120.01	65.59	65.86	41.03	59.26
79	ER26a	ExonRegion	0	39.91	25.99	41.02	27.55	15.53	14.20	17.09
80	E26_Da	NovelBoundary	0	1272.99	942.04	1349.48	1126.56	389.45	706.55	462.22
81	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
82	Ix	Intron	0	30.91	4.91	13.27	3.56	2.93	3.68	5.05
83	Ix_AR1	ActiveIntronRegion	0	31.03	4.93	13.32	3.57	2.95	3.70	5.07
84	ER27a	ExonRegion	0	0.64	0.00	0.73	0.36	0.24	0.46	0.31
85	Ix	Intron	0	30.61	5.55	13.95	4.18	5.19	4.32	4.78
86	Ix_AR1	ActiveIntronRegion	0	66.05	12.73	30.60	6.35	5.42	8.74	10.87
87	E28_Aa	NovelBoundary	0	1198.74	890.50	1178.30	1030.46	423.39	686.64	406.12
88	ER28a	ExonRegion	0	3.68	0.00	3.20	0.00	6.87	0.00	0.00