Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ATXN2L	Gene	0	343.42	673.43	612.71	1019.39	371.01	546.14	439.66
2	325200	Transcript	0	0	0	0	0	0	0	0
3	340394	Transcript	1	31.18	157.10	28.91	207.08	33.56	166.56	79.02
4	359153	Transcript	0	0	0	0	0	0	0	0
5	325215	Transcript	0	8.16	15.26	4.17	7.45	1.04	13.48	12.97
6	336783	Transcript	0	80.73	169.58	176.60	229.92	112.49	115.69	97.62
7	395547	Transcript	0	17.37	34.81	22.53	53.78	7.75	13.61	8.70
8	IG41_SR5	SilentIntergenicRegion	0	4.32	6.35	6.39	5.63	2.57	8.72	2.24
9	IG41_AR11	ActiveIntergenicRegion	0	11.10	7.28	8.99	14.37	4.18	9.27	3.86
10	IG41_SR7	SilentIntergenicRegion	0	6.84	24.09	15.17	67.69	4.61	22.70	6.36
11	ER1a	ExonRegion	0	18.23	93.39	28.71	132.36	17.17	72.02	20.81
12	E1a_E2a	KnownJunction	0	93.65	237.91	153.63	385.26	114.57	185.78	120.23
13	E1a_E3a	NovelJunction	0	2.90	32.13	3.94	64.91	0.00	29.99	0.00
14	ER2a	ExonRegion	0	214.33	409.08	345.37	630.69	285.24	295.23	219.37
15	E2a_E3a	KnownJunction	0	289.42	487.94	475.39	751.18	451.86	346.44	301.16
16	ER3a	ExonRegion	0	430.49	739.49	671.48	1060.64	516.86	518.83	426.43
17	E3a_E4a	KnownJunction	0	552.79	891.23	804.94	1308.99	572.40	652.01	469.77
18	ER4a	ExonRegion	0	673.61	1041.89	1052.85	1573.68	612.20	741.20	587.22
19	E4a_E5a	KnownJunction	0	672.19	1065.25	1117.74	1728.39	703.66	771.48	649.89
20	E4a_E7a	NovelJunction	0	7.24	25.14	0.75	19.21	2.24	22.73	0.56
21	ER5a	ExonRegion	0	745.63	1146.94	1199.32	1834.67	901.60	857.39	840.90
22	E5a_E6a	KnownJunction	0	823.08	1076.21	1313.88	1736.54	861.85	835.27	841.40
23	E5a_E7a	NovelJunction	0	8.91	58.51	5.65	80.62	1.18	39.23	2.08
24	ER6a	ExonRegion	0	778.02	1174.72	1365.67	1797.82	892.04	858.53	960.37
25	E6a_E7a	KnownJunction	0	689.06	1197.48	1349.81	1759.40	762.70	878.63	1071.55
26	ER7a	ExonRegion	0	676.73	1256.80	1265.04	1807.55	813.07	884.26	923.22
27	E7a_E8a	KnownJunction	0	624.05	1116.98	1157.20	1581.31	608.99	747.34	732.55
28	ER8a	ExonRegion	0	527.25	1024.40	1008.21	1427.42	583.92	690.16	709.30
29	E8a_E9a	KnownJunction	0	394.82	860.34	707.01	1108.19	473.62	548.51	487.27
30	ER9a	ExonRegion	0	402.14	836.70	736.32	1118.08	484.26	505.90	469.65
31	ER9b	ExonRegion	0	425.28	892.96	779.54	1255.81	418.85	654.14	586.31
32	E9b_E10a	KnownJunction	0	359.17	858.89	680.22	1175.59	353.12	657.72	489.35
33	E9b_E11a	NovelJunction	0	1.03	6.36	1.49	9.51	0.00	16.19	4.27
34	ER10a	ExonRegion	0	467.47	959.15	934.06	1481.30	406.39	826.94	685.68
35	E10a_E11a	KnownJunction	0	446.11	939.70	908.54	1586.32	429.17	950.64	712.77
36	ER11a	ExonRegion	0	360.19	819.90	779.37	1351.29	371.44	738.34	520.50
37	E11a_E12a	KnownJunction	0	327.52	654.68	783.14	951.14	285.74	482.90	474.08
38	E11a_E13a	NovelJunction	1	52.11	127.65	97.57	324.80	2.24	169.35	30.27
39	E11a_E14a	NovelJunction	1	0.83	19.44	0.72	30.04	0.00	44.89	0.00
40	ER12a	ExonRegion	0	328.92	680.71	776.49	975.66	378.75	467.31	508.45
41	E12a_E13a	KnownJunction	0	336.77	700.61	804.41	1053.30	408.89	448.17	543.43
42	E12a_E14a	NovelJunction	0	4.04	34.39	9.20	30.23	0.00	34.60	4.16
43	ER13a	ExonRegion	0	498.66	888.88	1197.53	1395.39	593.62	645.43	684.74
44	E13a_E14a	KnownJunction	0	613.57	1006.59	1438.67	1649.93	640.25	809.97	780.76
45	ER14a	ExonRegion	0	540.15	1072.50	1113.46	1502.41	492.03	865.15	662.09
46	E14a_E15a	KnownJunction	0	937.04	1074.21	1516.95	1461.13	663.92	995.83	674.05
47	E14a_E16a	NovelJunction	0	1.94	8.20	2.27	20.86	0.00	18.79	0.00
48	ER15a	ExonRegion	0	981.72	1197.05	1715.93	1677.73	706.19	1123.70	813.10
49	E15a_E16a	KnownJunction	0	932.90	1208.88	1724.14	1779.45	748.00	1189.96	893.88
50	ER16a	ExonRegion	0	1097.86	1225.56	1729.23	1796.42	878.12	1121.17	858.96
51	E16a_E17a	KnownJunction	0	950.14	1172.28	1467.24	1743.96	760.24	976.02	868.81
52	ER17a	ExonRegion	0	661.42	1185.30	1096.33	1690.66	601.42	952.65	768.52
53	E17a_E18a	KnownJunction	0	581.66	1083.25	899.63	1658.76	675.19	874.61	699.65
54	ER18a	ExonRegion	0	316.41	993.15	513.48	1581.75	546.17	869.40	609.11
55	E18a_E19a	KnownJunction	0	354.18	1237.49	514.90	1745.78	408.80	958.28	775.87
56	E18a_E21a	NovelJunction	0	0.85	6.70	1.94	15.47	0.00	17.71	6.41
57	ER19a	ExonRegion	0	434.52	1293.38	656.81	2010.97	655.24	1027.92	877.82
58	E19a_E20a	KnownJunction	0	514.30	1249.55	757.06	2036.55	999.43	1123.42	1063.00
59	E19a_E21a	NovelJunction	1	4.01	11.85	17.53	102.68	1.04	59.09	9.49
60	ER20a	ExonRegion	0	215.33	814.01	369.36	1326.27	425.03	691.09	514.74
61	E20a_E21a	KnownJunction	0	226.40	738.67	389.12	1171.39	314.35	680.61	503.32
62	ER21a	ExonRegion	0	218.18	728.31	367.84	1192.74	246.26	640.38	460.19
63	E21a_E22a	KnownJunction	0	327.32	788.25	514.99	1353.39	337.95	764.70	575.01
64	ER22a	ExonRegion	0	148.68	338.33	232.46	570.50	156.92	325.97	203.45
65	E22_Da	KnownBoundary	0	51.74	105.19	126.55	150.49	66.67	95.51	44.59
66	E22a_E22b	NovelJunction	0	13.57	31.16	19.77	77.72	13.88	34.14	15.74
67	E22a_E22c	KnownJunction	1	31.18	157.10	28.91	207.08	33.56	166.56	79.02
68	E22a_E22d	NovelJunction	0	9.66	58.48	10.88	53.53	6.18	42.91	20.51
69	ER22b	ExonRegion	0	70.07	115.84	131.31	175.27	69.27	97.29	62.62
70	E22_Db	KnownBoundary	0	79.21	114.99	155.56	187.85	81.63	89.16	62.10
71	E22b_E22b	KnownJunction	0	3.59	5.54	2.40	9.32	4.96	5.41	3.00
72	E22b_E22d	KnownJunction	0	8.16	15.26	4.17	7.45	1.04	13.48	12.97
73	ER22c	ExonRegion	1	69.76	137.08	151.24	241.10	76.02	110.67	54.37
74	E22_Ab	KnownBoundary	0	55.58	167.69	103.80	284.46	77.99	121.27	60.44
75	ER22d	ExonRegion	0	119.28	213.67	185.88	339.81	138.32	136.71	99.01
76	E22_Dc	KnownBoundary	0	39.69	86.07	61.66	104.54	90.92	52.55	53.26
77	E22c_E22c	NovelJunction	1	16.87	36.31	32.79	114.00	0.00	44.73	15.46
78	E22_Dd	KnownBoundary	0	37.47	90.16	84.17	100.35	122.96	49.50	59.09
79	E22d_E22c	KnownJunction	0	17.37	34.81	22.53	53.78	7.75	13.61	8.70
80	ER22e	ExonRegion	0	86.83	222.68	156.00	307.38	178.17	128.24	120.01
81	ER22f	ExonRegion	0	91.70	202.07	201.96	218.74	148.96	120.71	140.86
82	E22_Ac	KnownBoundary	1	73.74	169.50	214.30	169.02	194.43	96.77	151.04
83	E22_Ad	KnownBoundary	0	70.28	136.06	74.28	271.86	142.37	150.94	73.78
84	ER22g	ExonRegion	0	133.67	341.74	250.31	524.05	223.84	289.12	215.11
85	E22_De	KnownBoundary	0	111.09	281.26	170.53	484.98	190.67	264.92	126.26
86	ER22h	ExonRegion	0	118.31	307.73	182.63	524.59	194.68	301.08	157.96
87	ER22i	ExonRegion	0	196.05	422.57	267.75	704.01	189.70	418.44	224.10
88	E22_Ae	KnownBoundary	0	148.49	332.10	166.74	514.87	93.94	333.04	144.93
89	ER22j	ExonRegion	0	147.08	298.52	190.56	539.19	120.29	354.92	153.03
90	E22_Df	KnownBoundary	0	113.84	177.67	129.88	316.23	88.36	255.67	104.12
91	ER22k	ExonRegion	0	55.87	95.63	72.91	177.04	35.95	150.46	52.05
92	ER22l	ExonRegion	0	0.00	0.00	0.00	0.50	0.00	0.00	0.00
93	IG42_AR1	ActiveIntergenicRegion	0	13.21	5.71	12.53	6.95	13.29	5.77	7.13