Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KIAA0430	Gene	0	103.91	32.75	84.23	13.28	50.95	29.57	100.71
2	396368	Transcript	0	71.97	21.76	71.40	8.34	30.95	21.08	81.91
3	344181	Transcript	0	0.99	0.44	0.29	0.13	0.66	0.59	0.20
4	321370	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	8.76	2.68	10.12	1.55	7.77	1.25	9.69
6	E1a_E2a	KnownJunction	0	33.23	16.16	36.10	10.38	27.20	7.75	54.67
7	ER2a	ExonRegion	0	44.39	33.28	50.98	13.37	26.14	24.60	75.39
8	E2a_E3a	KnownJunction	0	78.74	49.36	77.38	12.30	42.69	33.34	123.28
9	E3_Aa	NovelBoundary	1	0.65	1.31	0.00	2.68	0.00	11.52	0.00
10	ER3a	ExonRegion	0	78.24	34.65	69.24	15.62	33.07	44.15	79.81
11	E3_Da	NovelBoundary	1	5.37	0.00	0.00	6.45	1.18	14.07	0.00
12	E3a_E4a	KnownJunction	0	130.06	29.42	115.58	17.31	24.99	36.23	92.49
13	ER4a	ExonRegion	0	76.80	33.95	82.46	16.15	30.64	29.69	99.59
14	E4a_E5a	KnownJunction	0	126.19	53.75	121.52	12.79	33.73	45.61	140.42
15	ER5a	ExonRegion	0	85.00	29.32	83.03	9.36	39.52	29.56	99.23
16	E5_Da	NovelBoundary	1	47.90	0.00	40.12	0.00	0.00	0.00	0.00
17	E5a_E6a	KnownJunction	1	115.71	35.57	88.88	16.12	63.79	9.57	101.38
18	ER6a	ExonRegion	0	146.54	34.19	109.32	16.07	80.64	17.51	152.86
19	E6a_E7a	KnownJunction	0	135.22	37.44	117.41	15.60	57.70	29.64	151.41
20	ER7a	ExonRegion	0	163.37	39.14	119.09	19.27	72.87	23.54	145.70
21	E7a_E8a	KnownJunction	1	104.68	24.54	64.11	11.97	46.52	5.44	74.22
22	E7a_E9a	NovelJunction	0	11.63	6.73	8.19	1.44	0.00	7.26	14.89
23	ER8a	ExonRegion	0	77.06	26.42	73.55	10.21	42.22	16.09	75.38
24	E8_Da	KnownBoundary	0	81.48	32.97	86.62	7.56	48.41	19.78	72.90
25	E8a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER8b	ExonRegion	0	81.68	25.19	71.44	6.97	37.77	14.71	65.51
27	E8b_E9a	KnownJunction	0	70.83	18.63	49.20	11.13	29.60	5.68	45.96
28	ER9a	ExonRegion	0	75.78	22.72	57.48	8.17	40.54	22.04	68.59
29	E9a_E10a	KnownJunction	0	90.96	20.07	75.63	10.43	39.35	17.63	75.10
30	ER10a	ExonRegion	0	87.11	33.61	81.81	11.97	38.33	23.08	86.68
31	E10_Ab	KnownBoundary	0	81.43	39.62	79.24	13.82	25.87	26.13	87.34
32	ER10b	ExonRegion	0	68.33	34.19	66.50	8.77	48.31	29.38	96.83
33	E10a_E11a	KnownJunction	0	71.82	20.26	65.73	5.50	30.45	17.82	73.31
34	E10a_E11b	KnownJunction	1	20.35	17.26	18.93	0.00	10.37	1.53	22.90
35	E11_Ab	NovelBoundary	0	74.99	21.83	85.62	13.17	42.14	26.88	92.25
36	ER11a	ExonRegion	0	72.12	23.26	77.08	11.18	31.44	24.34	90.52
37	ER11b	ExonRegion	0	72.96	44.19	81.87	12.75	36.98	30.22	105.92
38	E11a_E12a	KnownJunction	0	73.65	38.15	92.57	12.08	74.90	27.39	114.98
39	I11_AR1	ActiveIntronRegion	1	8.53	1.01	4.82	0.86	3.30	10.00	0.68
40	ER12a	ExonRegion	0	77.05	35.00	80.87	8.05	41.61	24.77	100.03
41	E12a_E13a	KnownJunction	0	72.65	37.73	86.38	12.27	42.76	19.91	120.68
42	E12a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER13a	ExonRegion	0	78.15	25.20	80.61	7.84	34.59	19.89	88.94
44	E13_Da	NovelBoundary	1	34.73	3.18	16.24	2.71	13.09	5.55	3.80
45	E13a_E14a	KnownJunction	1	64.97	21.99	62.30	2.14	20.82	19.56	68.86
46	I13_AR1	ActiveIntronRegion	1	29.98	1.53	12.88	0.39	8.18	4.24	1.91
47	I13_AR2	ActiveIntronRegion	1	56.43	8.85	37.35	4.99	20.94	17.16	4.63
48	I13_AR3	ActiveIntronRegion	1	59.60	8.37	38.01	4.99	19.17	17.16	6.07
49	I13_AR4	ActiveIntronRegion	1	60.26	9.31	39.68	4.99	19.17	17.16	6.58
50	I13_AR5	ActiveIntronRegion	1	60.51	9.72	42.93	4.99	18.93	17.47	6.83
51	I13_AR6	ActiveIntronRegion	1	71.57	10.24	42.48	5.70	18.16	14.71	8.58
52	I13_SR2	SilentIntronRegion	1	2.29	0.47	0.90	0.64	1.22	8.14	2.33
53	E14_Aa	NovelBoundary	1	8.11	0.00	2.79	1.65	1.15	19.70	0.70
54	ER14a	ExonRegion	0	74.95	26.94	64.35	7.90	30.42	24.70	75.94
55	E14a_E15a	KnownJunction	0	58.88	33.08	67.64	8.99	34.12	15.73	90.95
56	E14a_E16a	KnownJunction	0	3.87	1.63	0.72	0.00	2.60	1.02	0.54
57	E15_Aa	NovelBoundary	1	28.74	1.63	30.91	1.68	1.08	4.85	1.96
58	ER15a	ExonRegion	0	96.40	37.32	93.50	19.92	50.60	29.45	124.13
59	E15_Da	NovelBoundary	0	5.01	1.63	1.15	1.41	2.70	8.87	0.00
60	E15a_E16a	KnownJunction	0	72.48	52.91	83.07	20.78	28.29	32.11	122.20
61	ER16a	ExonRegion	0	92.26	50.63	97.19	20.55	51.18	35.60	142.70
62	E16a_E17a	KnownJunction	0	71.83	50.60	78.38	16.44	37.74	24.44	127.02
63	ER17a	ExonRegion	0	100.09	39.11	90.87	9.32	54.04	30.56	123.85
64	E17a_E18a	KnownJunction	0	109.40	46.61	116.27	12.30	71.42	29.48	134.72
65	E18_Aa	NovelBoundary	1	43.39	0.00	49.75	0.00	0.00	5.49	0.85
66	ER18a	ExonRegion	0	160.18	50.37	128.17	13.41	77.46	28.08	153.53
67	E18a_E19a	KnownJunction	1	156.23	44.08	149.06	9.70	80.29	16.83	157.69
68	E19_Aa	NovelBoundary	0	2.65	2.63	2.18	1.68	0.88	10.72	0.00
69	ER19a	ExonRegion	0	162.76	44.33	134.94	16.92	82.37	24.40	159.29
70	E19a_E20a	KnownJunction	1	150.56	53.15	112.62	25.68	73.61	18.84	137.19
71	E20_Aa	NovelBoundary	1	5.97	0.00	3.00	0.00	2.07	25.43	2.62
72	ER20a	ExonRegion	0	164.95	45.23	145.23	19.55	83.59	33.77	157.05
73	E20a_E21a	KnownJunction	0	133.67	34.13	118.18	13.65	62.22	28.70	127.99
74	ER21a	ExonRegion	0	151.82	40.49	132.77	16.81	82.27	38.31	175.60
75	E21a_E22a	KnownJunction	0	177.35	52.54	134.13	27.74	45.55	32.70	160.53
76	I21	Intron	1	2.09	0.72	0.64	1.34	1.04	11.62	0.74
77	I21_AR1	ActiveIntronRegion	1	1.64	1.12	1.26	1.90	1.25	9.40	0.59
78	I21_SR2	SilentIntronRegion	1	1.89	0.64	0.55	1.26	1.46	12.25	0.57
79	I21_AR2	ActiveIntronRegion	1	1.60	1.55	0.98	1.58	0.56	22.58	1.09
80	I21_SR3	SilentIntronRegion	1	2.60	0.48	0.43	1.17	0.68	9.87	0.90
81	E22_Aa	NovelBoundary	1	5.04	0.00	2.01	0.00	0.00	8.60	0.00
82	ER22a	ExonRegion	0	167.41	47.70	145.49	23.95	86.91	40.04	189.78
83	E22_Da	NovelBoundary	1	4.87	0.00	0.79	0.00	0.00	10.69	0.56
84	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
85	E22a_E24a	KnownJunction	0	101.66	44.69	92.67	19.72	57.03	24.60	128.78
86	ER23a	ExonRegion	0	3.83	1.12	1.27	1.17	1.70	3.05	0.62
87	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
88	E24_Aa	NovelBoundary	0	2.70	4.10	2.08	4.01	1.18	10.75	2.31
89	ER24a	ExonRegion	0	134.87	46.52	106.21	14.18	76.03	28.26	145.51
90	E24_Da	NovelBoundary	1	50.12	0.00	36.54	1.68	5.39	1.31	2.38
91	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
92	E24a_E26a	KnownJunction	0	114.04	34.10	81.94	6.72	56.43	19.00	121.00
93	I24	Intron	1	4.14	1.07	1.82	3.12	2.54	10.71	1.91
94	I24_AR1	ActiveIntronRegion	1	4.15	1.08	1.83	3.13	2.54	10.73	1.91
95	E25_Aa	NovelBoundary	1	4.17	1.31	1.68	4.44	3.09	12.84	0.00
96	ER25a	ExonRegion	0	1.21	1.20	0.62	0.00	1.64	1.21	0.66
97	E25_Da	NovelBoundary	1	5.32	0.00	5.23	0.00	1.94	11.42	0.00
98	E25a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
99	I25	Intron	1	8.56	1.01	1.93	2.41	4.93	9.49	2.79
100	I25_AR1	ActiveIntronRegion	1	8.62	1.01	1.94	2.43	4.96	9.56	2.81
101	ER26a	ExonRegion	0	172.87	42.88	123.32	12.71	77.40	31.09	160.13
102	E26_Da	NovelBoundary	0	16.56	8.88	3.64	1.54	6.48	10.91	6.85
103	E26a_E27a	KnownJunction	0	228.17	46.84	138.27	16.36	92.33	36.69	173.32
104	E27_Aa	NovelBoundary	0	2.72	5.49	0.56	2.98	2.33	12.65	3.77
105	ER27a	ExonRegion	0	129.58	39.27	82.31	16.88	58.12	27.58	126.72
106	E27_Da	NovelBoundary	0	2.69	1.18	5.37	0.00	1.18	8.84	4.41
107	E27a_E28a	KnownJunction	0	66.49	17.65	51.89	9.56	33.03	12.65	92.04
108	I27_AR2	ActiveIntronRegion	1	4.26	1.42	1.18	3.64	0.32	9.24	0.79
109	E28_Aa	NovelBoundary	1	6.78	2.94	7.99	0.00	0.00	10.26	0.89
110	ER28a	ExonRegion	0	90.50	24.01	59.46	13.88	45.77	33.89	91.47
111	E28_Da	NovelBoundary	1	0.00	2.78	1.25	0.00	0.00	11.77	0.00
112	E28a_E29a	KnownJunction	0	40.71	27.19	46.17	15.50	19.11	34.81	80.47
113	I28	Intron	0	2.90	1.52	1.57	0.86	1.49	8.52	0.71
114	I28_SR1	SilentIntronRegion	1	2.51	1.55	1.36	1.07	1.31	10.49	0.81
115	ER29a	ExonRegion	0	121.90	31.40	86.05	14.16	57.97	33.64	93.37
116	IG20_AR4	ActiveIntergenicRegion	0	6.02	2.60	0.15	0.86	3.40	9.52	1.99
117	IG20_AR3	ActiveIntergenicRegion	0	2.63	1.24	1.24	0.33	3.72	9.09	1.95