Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SMG1	Gene	0	328.92	215.03	427.71	203.07	157.26	152.75	155.75
2	389467	Transcript	0	249.59	184.76	328.41	176.54	107.39	104.44	122.72
3	ER1a	ExonRegion	0	2.14	26.70	9.38	20.52	5.44	10.10	4.51
4	E1a_E2a	KnownJunction	1	14.22	52.86	38.73	52.23	12.89	31.92	9.53
5	ER2a	ExonRegion	0	64.57	117.58	100.04	87.59	23.44	48.08	39.45
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER3a	ExonRegion	0	87.74	129.63	135.91	102.60	30.43	50.97	56.61
8	E3a_E4a	KnownJunction	0	98.39	136.61	115.71	112.16	36.22	64.13	57.74
9	ER4a	ExonRegion	0	101.83	161.35	184.50	143.10	29.89	77.19	60.35
10	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER5a	ExonRegion	0	107.45	143.31	198.98	120.60	27.84	83.20	55.51
12	E5a_E6a	KnownJunction	0	71.05	122.69	140.46	118.23	30.52	71.80	55.18
13	E5a_E7a	NovelJunction	1	6.54	2.99	9.56	13.09	0.00	0.00	2.48
14	ER6a	ExonRegion	0	115.43	105.11	201.89	105.52	26.80	61.16	58.15
15	E6a_E7a	KnownJunction	0	81.40	131.07	165.37	124.32	18.42	66.30	43.01
16	ER7a	ExonRegion	0	259.01	182.50	325.24	167.73	44.55	66.17	91.31
17	E7a_E8a	KnownJunction	1	573.55	142.71	399.75	158.48	71.42	48.29	102.94
18	ER8a	ExonRegion	1	344.67	194.44	398.49	206.91	75.83	70.96	108.40
19	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER9a	ExonRegion	0	336.87	193.44	376.03	181.92	61.23	83.99	93.06
21	E9a_E10a	KnownJunction	0	175.39	129.05	223.10	132.29	29.72	67.16	62.70
22	ER10a	ExonRegion	0	212.47	143.89	288.35	126.84	56.25	78.86	79.64
23	E10a_E11a	KnownJunction	0	131.13	148.07	254.10	128.90	50.02	72.09	85.03
24	ER11a	ExonRegion	0	167.38	211.19	244.56	166.79	36.36	140.85	85.85
25	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER12a	ExonRegion	0	267.77	145.53	311.42	161.96	35.05	95.56	90.88
27	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER13a	ExonRegion	0	237.23	147.21	346.19	155.21	51.33	65.27	104.91
29	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER14a	ExonRegion	0	225.50	172.85	346.07	191.12	54.20	72.85	115.90
31	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER15a	ExonRegion	0	299.15	182.75	439.86	212.43	84.75	110.47	130.90
33	E15a_E16a	KnownJunction	0	156.80	110.58	280.62	110.61	37.99	75.23	73.74
34	ER16a	ExonRegion	0	205.79	154.24	350.77	134.16	61.90	84.24	110.62
35	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER17a	ExonRegion	0	259.24	151.10	432.24	158.07	76.95	87.27	143.55
37	E17a_E18a	KnownJunction	0	248.70	145.10	454.48	169.32	64.34	91.25	148.60
38	ER18a	ExonRegion	0	165.64	131.74	273.02	148.52	61.87	75.23	105.92
39	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER19a	ExonRegion	0	233.75	77.54	361.08	112.96	48.26	46.74	113.93
41	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER20a	ExonRegion	0	166.37	100.00	220.91	94.92	46.93	53.44	69.41
43	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER21a	ExonRegion	0	199.42	141.18	271.89	145.54	52.04	92.89	91.74
45	E21a_E22a	KnownJunction	0	213.80	207.33	324.99	218.06	91.50	100.47	135.19
46	ER22a	ExonRegion	0	135.91	172.29	190.92	144.23	41.89	71.03	84.16
47	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER23a	ExonRegion	0	158.30	161.22	214.30	122.36	58.43	57.99	87.73
49	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	ER24a	ExonRegion	0	163.41	154.74	220.68	132.57	40.39	68.54	86.17
51	E24a_E25a	KnownJunction	0	195.32	130.83	254.30	148.24	57.42	89.99	96.25
52	ER25a	ExonRegion	0	168.46	166.12	253.23	140.01	41.33	86.93	95.88
53	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER26a	ExonRegion	0	224.74	147.36	342.93	150.92	131.04	84.75	127.94
55	E26a_E27a	KnownJunction	0	185.21	99.33	267.19	108.07	40.73	56.23	85.87
56	ER27a	ExonRegion	0	548.36	333.47	602.73	391.32	210.27	224.24	203.44
57	E27a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	E27a_E29a	NovelJunction	0	3.07	6.57	4.58	8.51	2.31	4.02	14.60
59	ER28a	ExonRegion	0	1031.51	872.88	1103.72	982.58	324.75	583.78	409.10
60	E28_Da	NovelBoundary	1	167.65	40.17	93.97	47.44	17.96	21.28	23.83
61	E28a_E29a	KnownJunction	0	1212.34	775.11	1117.57	857.95	370.60	503.73	322.06
62	E29_Aa	NovelBoundary	1	107.73	26.27	46.33	16.55	5.44	11.95	14.60
63	ER29a	ExonRegion	0	1035.53	686.18	1051.59	747.54	360.73	477.30	356.95
64	E29a_E30a	KnownJunction	0	510.16	195.22	481.74	160.33	176.35	138.21	135.40
65	ER30a	ExonRegion	1	562.57	203.45	486.87	191.24	135.92	124.31	126.02
66	E30a_E31a	KnownJunction	0	268.01	122.24	304.94	98.39	73.61	55.66	76.23
67	ER31a	ExonRegion	0	213.10	184.54	312.89	149.92	71.51	75.19	98.92
68	E31a_E32a	KnownJunction	1	184.91	166.32	253.90	161.06	68.58	55.31	90.67
69	ER32a	ExonRegion	0	137.79	177.94	236.02	152.51	60.87	69.26	85.92
70	E32a_E33a	KnownJunction	1	144.40	192.96	214.38	154.91	79.65	45.35	79.61
71	ER33a	ExonRegion	1	156.68	191.96	274.73	156.18	71.72	64.48	93.84
72	E33a_E34a	KnownJunction	0	126.33	162.49	215.64	135.02	46.87	62.63	75.34
73	ER34a	ExonRegion	0	187.98	192.35	307.68	149.92	95.46	83.69	112.76
74	E34a_E35a	KnownJunction	0	202.38	189.55	333.42	160.62	99.57	127.57	137.48
75	ER35a	ExonRegion	0	219.64	216.27	299.48	166.92	98.35	112.06	141.50
76	E35a_E36a	KnownJunction	0	250.27	210.46	334.21	162.09	108.65	87.93	141.82
77	ER36a	ExonRegion	0	225.38	201.49	339.49	175.43	103.55	88.63	139.11
78	E36a_E37a	KnownJunction	0	270.69	179.36	424.96	163.68	98.21	82.09	120.04
79	ER37a	ExonRegion	0	224.41	218.37	377.03	185.82	100.78	107.71	146.42
80	E37a_E38a	KnownJunction	0	162.93	176.26	279.23	189.83	101.89	125.05	133.74
81	ER38a	ExonRegion	0	198.24	219.85	325.59	181.65	100.95	116.51	158.37
82	E38a_E39a	KnownJunction	0	198.91	185.66	334.67	181.70	104.52	126.41	150.39
83	ER39a	ExonRegion	0	217.92	194.37	358.34	168.82	108.06	113.50	140.69
84	E39a_E40a	KnownJunction	0	199.51	205.05	350.21	163.22	102.47	89.86	135.52
85	ER40a	ExonRegion	0	333.49	239.80	447.52	175.82	138.16	116.00	163.50
86	E40a_E41a	KnownJunction	0	414.69	267.31	500.92	171.73	148.00	124.51	155.57
87	E41_Aa	NovelBoundary	1	196.79	2.15	205.02	2.68	39.65	0.00	2.44
88	ER41a	ExonRegion	0	620.67	299.86	577.09	220.43	196.14	141.49	186.79
89	E41a_E42a	KnownJunction	1	877.99	301.44	656.93	243.71	248.65	152.09	177.11
90	ER42a	ExonRegion	0	535.61	218.30	463.55	173.52	160.37	123.60	133.98
91	E42a_E43a	KnownJunction	0	254.09	196.72	317.24	174.47	102.38	86.19	116.46
92	ER43a	ExonRegion	0	337.92	230.73	415.91	218.14	148.62	106.24	150.40
93	E43_Da	NovelBoundary	1	213.45	7.62	226.12	7.72	10.81	5.52	8.18
94	E43a_E44a	KnownJunction	0	412.84	263.13	514.10	276.55	136.24	154.77	165.46
95	ER44a	ExonRegion	0	398.10	318.17	488.40	291.06	147.39	167.04	176.36
96	E44a_E45a	KnownJunction	0	367.28	259.51	447.48	218.38	146.64	149.62	161.83
97	ER45a	ExonRegion	0	215.41	196.46	291.79	179.51	114.71	109.72	119.74
98	E45_Da	NovelBoundary	1	90.73	4.15	124.07	0.00	2.10	1.21	5.13
99	E45a_E46a	KnownJunction	0	178.67	157.18	289.84	164.33	79.09	107.82	93.21
100	ER46a	ExonRegion	0	213.08	233.44	376.49	200.34	118.40	129.69	156.26
101	E46a_E47a	KnownJunction	0	234.33	275.11	383.40	241.11	138.16	121.40	196.30
102	ER47a	ExonRegion	0	239.69	281.64	392.83	255.20	128.53	149.78	188.54
103	E47a_E48a	KnownJunction	0	181.44	251.63	310.03	255.12	112.31	121.27	187.24
104	ER48a	ExonRegion	0	188.80	236.89	274.26	197.77	123.88	121.32	155.87
105	E48a_E49a	KnownJunction	0	184.31	253.10	325.42	227.70	166.63	163.00	176.68
106	ER49a	ExonRegion	0	338.44	250.25	393.82	255.06	172.48	120.39	173.54
107	E49a_E50a	KnownJunction	0	348.60	244.32	428.37	275.25	162.36	132.61	168.65
108	ER50a	ExonRegion	0	310.02	213.79	368.28	209.03	161.60	99.27	152.38
109	E50a_E51a	KnownJunction	0	220.14	183.56	334.05	231.01	169.35	130.17	137.14
110	ER51a	ExonRegion	0	272.01	181.07	392.59	196.41	169.51	96.96	147.58
111	E51a_E52a	KnownJunction	0	317.03	158.92	458.83	234.96	205.31	117.73	164.93
112	E51a_E53a	NovelJunction	0	14.42	11.56	15.12	5.36	2.35	2.84	5.14
113	ER52a	ExonRegion	0	420.68	206.56	522.61	210.41	192.29	127.33	177.82
114	E52a_E53a	KnownJunction	0	344.93	177.12	448.31	171.81	174.97	95.81	159.74
115	ER53a	ExonRegion	0	317.85	148.63	461.22	151.05	146.69	98.45	151.53
116	E53a_E54a	KnownJunction	0	226.20	148.49	386.92	150.90	99.59	88.04	135.92
117	ER54a	ExonRegion	0	251.93	227.58	398.22	216.14	164.68	134.41	181.30
118	E54a_E55a	KnownJunction	0	181.02	185.37	295.86	172.33	79.65	108.81	162.48
119	ER55a	ExonRegion	0	225.42	215.95	341.70	213.83	175.47	133.09	187.35
120	E55a_E56a	KnownJunction	0	253.44	195.28	324.88	188.85	142.86	123.25	129.76
121	ER56a	ExonRegion	0	313.04	226.12	397.80	227.20	185.77	127.89	170.66
122	E56a_E57a	KnownJunction	0	442.90	280.11	517.07	277.85	219.12	149.73	198.48
123	ER57a	ExonRegion	0	327.87	247.03	464.06	215.46	195.55	151.07	200.76
124	E57a_E58a	KnownJunction	0	276.14	221.34	423.75	205.73	192.70	164.47	189.43
125	ER58a	ExonRegion	0	274.10	244.23	475.85	229.85	214.02	156.03	215.09
126	E58a_E59a	KnownJunction	0	347.50	238.83	552.40	248.43	198.53	121.35	205.73
127	E59_Aa	NovelBoundary	1	93.08	24.88	50.07	4.25	9.11	4.15	14.56
128	ER59a	ExonRegion	0	460.09	264.53	661.84	266.57	284.52	182.22	272.98
129	E59a_E60a	KnownJunction	0	421.45	236.44	535.80	179.48	284.66	134.21	181.54
130	ER60a	ExonRegion	0	421.04	244.38	538.72	204.76	267.11	145.03	224.34
131	E60a_E61a	KnownJunction	0	347.85	229.35	415.39	201.75	226.17	132.39	197.60
132	ER61a	ExonRegion	0	334.68	270.23	472.86	288.21	239.90	195.56	229.83
133	E61a_E62a	KnownJunction	0	324.52	290.93	477.20	312.63	271.59	242.86	240.97
134	ER62a	ExonRegion	0	275.22	331.01	461.60	331.52	255.69	231.21	251.33
135	E62a_E63a	KnownJunction	0	237.98	310.45	401.61	303.10	257.22	237.07	223.90
136	E63_Aa	NovelBoundary	1	122.87	35.91	180.48	12.71	6.22	12.60	13.61
137	ER63a	ExonRegion	0	432.75	217.67	547.31	209.06	240.95	231.98	186.95
138	IG38	Intergenic	0	12.04	4.97	3.48	3.14	1.37	4.86	2.96
139	IG38_AR4	ActiveIntergenicRegion	0	10.97	3.87	2.50	3.04	2.81	5.82	1.42
140	IG38_SR3	SilentIntergenicRegion	0	11.47	4.78	4.02	3.80	2.35	7.01	4.02
141	IG38_AR2	ActiveIntergenicRegion	0	22.86	6.07	3.82	3.84	1.38	4.01	3.78
142	IG38_SR2	SilentIntergenicRegion	0	12.47	6.53	4.18	3.46	0.83	3.78	3.38