Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RNF40	Gene	0	84.39	152.57	126.11	222.26	76.82	123.82	101.61
2	402121	Transcript	0	26.23	43.72	33.48	62.28	21.18	25.41	31.35
3	380329	Transcript	0	5.84	0.00	5.03	0.00	0.00	0.00	0.00
4	324685	Transcript	0	0	0	0	0	0	0	0
5	357890	Transcript	0	0.00	1.10	0.00	0.00	0.00	0.00	0.69
6	ER1a	ExonRegion	0	5.45	4.37	1.11	7.34	1.93	3.08	1.17
7	E1_Ab	KnownBoundary	0	13.39	10.40	6.29	21.08	4.10	5.79	3.10
8	ER1b	ExonRegion	0	44.71	69.12	51.36	104.55	29.13	47.94	48.18
9	E1_Da	KnownBoundary	0	17.42	17.16	21.38	30.34	2.10	21.63	12.14
10	E1a_E2a	KnownJunction	0	64.72	115.62	94.53	166.23	57.33	66.73	85.53
11	ER1c	ExonRegion	0	5.40	12.02	9.02	21.20	2.37	16.97	8.10
12	E1b_E2a	KnownJunction	0	2.25	9.69	7.40	16.77	1.96	11.85	6.15
13	ER2a	ExonRegion	0	43.40	102.02	58.18	143.67	17.00	77.22	53.26
14	E2a_E3a	KnownJunction	0	77.17	177.65	138.59	245.04	38.15	147.51	119.09
15	ER3a	ExonRegion	0	44.66	190.43	79.84	243.15	42.70	153.94	70.40
16	E3a_E4a	KnownJunction	0	61.49	193.80	97.95	241.60	45.11	122.39	85.37
17	ER4a	ExonRegion	0	64.53	185.16	109.86	227.23	50.15	124.83	86.19
18	E4_Da	KnownBoundary	0	69.73	172.52	115.65	215.59	58.90	111.84	83.14
19	E4a_E15b	KnownJunction	0	11.68	0.00	10.06	0.00	0.00	0.00	0.00
20	ER4b	ExonRegion	0	75.89	200.31	138.51	215.11	64.43	150.87	111.90
21	E4b_E5a	KnownJunction	0	79.16	191.39	131.16	232.71	71.72	146.19	114.25
22	ER5a	ExonRegion	0	65.19	190.57	113.37	211.56	58.91	136.46	99.65
23	E5a_E6a	KnownJunction	0	59.82	175.68	101.99	201.69	64.04	125.40	113.45
24	ER6a	ExonRegion	0	75.68	185.02	118.53	250.52	63.77	135.92	98.14
25	E6a_E7a	KnownJunction	0	79.36	218.68	146.62	277.85	71.09	151.58	105.85
26	ER7a	ExonRegion	0	96.56	240.96	182.29	363.11	95.82	151.30	126.17
27	E7a_E8a	KnownJunction	0	100.44	244.46	192.52	363.16	87.58	165.33	115.71
28	ER8a	ExonRegion	0	100.28	233.27	194.35	363.90	86.77	160.93	120.33
29	E8_Da	NovelBoundary	1	43.74	7.12	11.84	11.11	3.25	4.23	4.01
30	E8a_E9a	KnownJunction	0	123.16	211.62	198.28	339.48	114.11	132.69	125.77
31	E8a_E10a	NovelJunction	1	2.29	15.34	1.44	16.61	0.00	8.92	17.60
32	E8a_E11a	KnownJunction	0	0.00	1.10	0.00	0.00	0.00	0.00	0.69
33	I8	Intron	0	32.52	12.68	19.29	11.51	2.54	8.07	8.09
34	I8_SR1	SilentIntronRegion	0	36.23	12.85	21.28	12.58	2.55	8.89	9.21
35	E9_Aa	NovelBoundary	1	29.99	15.21	13.62	6.45	0.00	6.46	5.88
36	ER9a	ExonRegion	0	132.34	220.35	195.94	318.43	109.29	147.09	115.95
37	E9_Da	NovelBoundary	1	57.28	12.95	66.92	5.12	0.00	4.15	7.25
38	E9a_E10a	KnownJunction	0	121.42	197.04	162.54	275.68	104.73	104.01	106.04
39	ER10a	ExonRegion	0	144.28	203.08	172.56	346.41	110.93	157.98	144.87
40	E10a_E11a	KnownJunction	0	154.05	186.42	155.19	338.72	104.08	177.12	168.92
41	ER11a	ExonRegion	0	144.13	241.63	167.32	348.90	121.14	164.15	207.14
42	E11a_E12a	KnownJunction	0	172.12	236.21	189.11	369.39	86.89	218.42	224.49
43	I11_AR2	ActiveIntronRegion	0	23.03	13.93	19.08	13.45	3.39	1.98	5.18
44	E12_Aa	NovelBoundary	1	33.06	9.72	15.29	12.06	2.97	2.95	8.14
45	ER12a	ExonRegion	0	145.13	223.44	173.86	340.88	122.45	144.36	188.15
46	E12a_E13a	KnownJunction	0	101.49	189.18	125.63	313.77	100.65	155.57	208.31
47	ER13a	ExonRegion	0	84.45	166.16	121.25	237.90	68.75	114.62	88.52
48	E13a_E14a	KnownJunction	0	156.32	233.71	210.99	364.32	92.88	170.79	125.30
49	ER14a	ExonRegion	0	117.39	218.04	167.35	334.06	111.22	157.09	126.89
50	E14a_E15a	KnownJunction	0	50.69	160.57	87.31	243.93	88.11	121.24	81.42
51	E15_Ab	NovelBoundary	0	39.40	104.43	65.13	134.37	44.01	75.90	51.44
52	ER15a	ExonRegion	0	56.19	166.36	97.88	226.56	80.12	119.00	84.32
53	ER15b	ExonRegion	0	127.63	208.47	156.06	284.24	136.23	137.46	132.52
54	E15a_E16a	KnownJunction	0	111.24	216.77	143.13	357.44	114.20	165.60	145.33
55	E16_Aa	NovelBoundary	1	53.26	16.84	59.36	7.78	3.23	8.98	2.65
56	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER16a	ExonRegion	0	115.91	238.37	154.30	341.20	129.54	171.59	151.36
58	ER16b	ExonRegion	0	127.67	243.92	176.83	323.68	135.82	182.25	159.42
59	E16b_E17a	KnownJunction	0	102.04	206.31	140.33	293.02	143.43	152.81	143.19
60	ER17a	ExonRegion	0	95.52	189.80	139.93	287.48	110.81	146.48	123.47
61	E17a_E18a	KnownJunction	0	97.22	174.13	159.25	272.27	134.14	122.58	121.86
62	ER18a	ExonRegion	0	92.68	184.60	142.13	281.30	115.39	146.92	125.78
63	E18a_E19a	KnownJunction	0	110.07	216.32	173.92	281.94	133.34	136.41	109.65
64	E19_Aa	NovelBoundary	0	17.98	49.81	17.17	62.20	7.40	25.14	13.76
65	ER19a	ExonRegion	0	121.52	245.85	186.07	316.84	142.16	167.22	154.08
66	E19a_E20a	KnownJunction	0	123.31	249.37	236.87	325.12	156.21	203.89	188.06
67	ER20a	ExonRegion	0	125.88	183.23	205.59	291.40	116.04	194.14	151.81
68	E20_Da	KnownBoundary	0	14.09	19.28	11.65	13.84	8.81	8.12	7.05
69	ER20b	ExonRegion	0	8.50	11.15	4.81	13.27	4.28	6.41	7.34
70	IG44	Intergenic	0	10.72	5.98	3.73	3.97	1.07	3.21	1.67
71	IG44_SR1	SilentIntergenicRegion	0	10.73	5.98	3.74	3.97	1.07	3.21	1.67