Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC099489.2	Gene	0	10.37	7.46	8.19	11.14	13.38	6.38	2.57
2	344649	Transcript	0	5.05	4.62	4.94	8.24	9.42	4.13	1.15
3	IG42	Intergenic	0	25.19	7.96	11.69	9.34	1.66	6.81	2.92
4	IG42_AR5	ActiveIntergenicRegion	0	186.47	99.89	122.74	83.56	60.78	75.21	76.75
5	IG42_SR4	SilentIntergenicRegion	0	70.60	20.48	32.37	24.10	3.87	21.10	6.75
6	IG42_AR4	ActiveIntergenicRegion	0	35.11	19.07	15.99	28.21	0.86	26.26	5.61
7	IG42_SR3	SilentIntergenicRegion	0	15.51	4.52	6.76	5.68	0.43	3.18	1.30
8	IG42_AR2	ActiveIntergenicRegion	0	6.62	1.80	4.14	3.09	8.45	3.79	0.00
9	ER1a	ExonRegion	0	2.70	0.00	1.42	3.88	12.10	4.66	0.78
10	E1a_E2a	KnownJunction	0	6.39	0.00	3.99	10.89	17.50	9.62	1.66
11	I1	Intron	0	15.73	2.04	4.10	2.11	2.13	0.46	0.97
12	I1_SR1	SilentIntronRegion	0	15.76	2.05	4.10	2.11	2.14	0.46	0.97
13	ER2a	ExonRegion	0	12.66	6.77	7.77	15.44	9.73	7.90	1.68
14	E2a_E3a	KnownJunction	0	5.06	5.39	1.42	8.18	0.00	3.03	0.00
15	I2_AR1	ActiveIntronRegion	0	16.84	2.28	5.90	6.69	6.18	2.65	3.46
16	E3_Aa	NovelBoundary	0	18.33	1.63	6.38	6.10	2.03	2.41	0.76
17	ER3a	ExonRegion	0	10.46	5.94	8.99	11.10	8.97	2.74	1.80
18	E3_Da	NovelBoundary	0	25.20	5.46	3.03	6.69	7.84	4.02	1.43
19	E3a_E4a	KnownJunction	0	4.02	1.34	2.85	1.11	6.27	0.00	0.00
20	ER4a	ExonRegion	0	9.45	4.07	3.33	8.45	8.99	1.43	0.65
21	E4a_E5a	KnownJunction	0	3.20	5.65	3.46	6.69	6.69	1.66	1.73
22	ER5a	ExonRegion	0	4.10	4.68	2.83	9.54	7.85	1.51	1.64
23	E5_Da	NovelBoundary	0	5.36	4.65	3.85	8.99	7.91	1.58	0.00
24	E5a_E6a	KnownJunction	0	2.39	2.71	2.37	4.14	3.30	2.57	0.00
25	E6_Aa	NovelBoundary	0	8.96	2.39	0.83	8.18	12.22	1.53	2.18
26	ER6a	ExonRegion	0	5.40	6.09	4.48	5.56	9.26	3.94	0.83
27	E6_Da	NovelBoundary	0	11.45	1.42	0.73	10.13	8.74	0.00	2.87
28	E6a_E7a	KnownJunction	0	1.35	5.33	6.45	10.67	13.12	4.07	0.00
29	I6	Intron	0	7.88	1.57	2.08	2.75	8.19	0.47	1.66
30	I6_SR1	SilentIntronRegion	0	7.91	1.58	2.08	2.76	8.22	0.47	1.66
31	E7_Aa	NovelBoundary	0	15.57	1.63	0.57	1.68	5.28	0.00	0.60
32	ER7a	ExonRegion	0	8.39	8.82	6.24	9.84	9.94	4.16	0.59
33	E7_Da	NovelBoundary	0	14.79	4.39	2.87	4.47	1.04	0.00	0.62
34	E7a_E8a	KnownJunction	0	1.00	10.85	3.32	4.98	8.09	2.89	0.00
35	ER8a	ExonRegion	0	4.36	8.99	5.19	8.17	8.48	5.43	0.31
36	E8a_E9a	KnownJunction	0	0.82	3.60	3.62	8.89	10.42	6.24	0.00
37	E9_Aa	NovelBoundary	0	12.00	5.57	4.28	1.63	5.72	1.29	0.57
38	ER9a	ExonRegion	0	12.31	7.08	9.59	10.72	14.76	6.64	1.38
39	E9a_E10a	KnownJunction	0	5.14	3.94	7.67	9.40	12.84	7.02	0.79
40	ER10a	ExonRegion	0	8.18	1.47	6.20	7.73	7.64	2.01	0.44
41	E10_Da	NovelBoundary	0	20.60	1.63	6.29	0.00	4.98	5.57	0.62
42	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E10a_E12a	NovelJunction	0	0.73	1.63	8.02	0.00	12.84	3.30	0.83
44	I10	Intron	0	15.01	1.99	3.98	0.23	8.63	1.11	1.10
45	I10_SR1	SilentIntronRegion	0	15.08	2.00	4.00	0.23	8.67	1.12	1.10
46	ER11a	ExonRegion	0	5.37	0.86	0.78	1.72	14.25	0.87	1.44
47	E11_Da	NovelBoundary	0	1167.64	668.29	879.29	595.46	750.28	480.63	649.39
48	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E11a_E23a	NovelJunction	0	10.46	15.92	1.58	10.86	0.85	9.33	10.28
50	I11	Intron	0	15.21	2.62	6.64	2.49	12.47	2.68	1.94
51	I11_SR1	SilentIntronRegion	0	11.69	0.61	5.24	1.33	5.28	0.59	0.47
52	I11_AR1	ActiveIntronRegion	0	11.03	3.75	8.17	2.75	6.35	1.27	1.63
53	I11_SR2	SilentIntronRegion	0	16.49	3.07	6.89	2.78	14.88	3.36	2.35
54	ER12a	ExonRegion	0	7.98	1.78	3.33	5.46	12.18	3.23	0.95
55	E12_Da	NovelBoundary	0	21.91	2.52	2.74	0.00	7.91	2.79	0.00
56	E12a_E13a	KnownJunction	0	0.00	2.42	3.02	7.78	7.01	2.57	1.42
57	I12	Intron	0	13.61	1.95	2.66	1.12	5.01	0.86	0.41
58	I12_SR1	SilentIntronRegion	0	13.64	1.96	2.67	1.12	5.02	0.86	0.41
59	ER13a	ExonRegion	0	3.55	5.44	4.06	7.25	9.44	6.26	1.27
60	E13_Da	NovelBoundary	0	4.16	0.00	3.42	1.57	7.61	1.07	0.75
61	E13a_E14a	KnownJunction	0	0.65	3.26	2.90	8.02	5.00	4.10	0.85
62	ER14a	ExonRegion	0	1.22	5.00	5.66	12.07	10.41	6.58	0.89
63	E14a_E15a	KnownJunction	0	0.67	0.00	4.64	11.08	12.03	3.81	0.82
64	ER15a	ExonRegion	0	5.29	8.38	7.40	13.94	10.77	7.20	1.05
65	E15a_E16a	KnownJunction	0	1.69	8.38	5.96	14.55	6.13	1.13	0.00
66	I15	Intron	0	11.76	0.70	1.71	0.73	5.37	1.26	0.49
67	I15_SR1	SilentIntronRegion	0	13.01	0.78	1.89	0.81	5.95	1.39	0.54
68	ER16a	ExonRegion	0	4.25	4.84	4.65	12.01	11.08	5.94	0.65
69	E16a_E17a	KnownJunction	0	1.34	0.00	4.22	2.65	12.47	1.63	0.76
70	I16_AR8	ActiveIntronRegion	0	10.30	0.13	2.17	0.48	1.75	1.55	1.23
71	ER17a	ExonRegion	0	5.63	3.95	5.14	8.55	12.77	6.74	1.27
72	E17a_E18a	KnownJunction	0	2.57	3.99	2.79	5.99	11.46	6.32	0.89
73	E18_Aa	NovelBoundary	0	9.88	0.00	0.68	1.16	0.00	0.00	1.49
74	ER18a	ExonRegion	0	8.35	4.28	5.83	13.89	12.23	5.46	2.12
75	E18a_E19a	KnownJunction	0	1.79	0.00	4.33	7.94	8.51	1.07	2.04
76	ER19a	ExonRegion	0	4.33	2.19	4.94	10.29	9.41	3.35	1.33
77	E19a_E20a	KnownJunction	0	3.91	2.34	4.87	9.48	10.26	2.55	0.57
78	E20_Aa	NovelBoundary	0	0.72	1.63	0.00	1.68	8.62	0.00	0.00
79	ER20a	ExonRegion	0	4.75	5.55	7.84	11.34	9.02	4.70	1.86
80	E20a_E21a	KnownJunction	0	2.20	14.58	6.67	15.04	5.46	5.39	0.00
81	ER21a	ExonRegion	0	3.70	6.17	6.04	8.61	9.87	5.19	1.18
82	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
83	E22_Aa	NovelBoundary	0	123.14	147.99	100.13	148.49	41.43	111.09	99.66
84	ER22a	ExonRegion	0	1.49	0.00	0.00	0.00	4.81	0.00	0.00
85	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
86	ER23a	ExonRegion	0	49.27	31.91	35.95	27.86	43.22	24.05	16.21
87	IG41_AR17	ActiveIntergenicRegion	0	3.89	2.48	4.74	11.44	10.77	3.51	1.46
88	IG41_AR16	ActiveIntergenicRegion	0	1.14	1.63	6.66	10.92	12.83	2.85	0.83
89	IG41_AR10	ActiveIntergenicRegion	0	3.33	6.51	5.60	12.72	10.63	7.95	1.44
90	IG41_AR9	ActiveIntergenicRegion	0	3.18	0.00	2.33	2.18	8.69	1.01	1.22
91	IG41_AR6	ActiveIntergenicRegion	0	3.11	1.66	3.72	9.31	8.01	4.36	1.59
92	IG41_AR5	ActiveIntergenicRegion	0	5.84	6.55	6.01	18.93	17.49	11.39	2.58
93	IG41_AR4	ActiveIntergenicRegion	0	0.00	4.69	1.87	12.54	19.52	11.30	2.78
94	IG41_AR3	ActiveIntergenicRegion	0	5.39	2.32	3.28	7.23	13.30	9.56	0.00
95	IG41_AR2	ActiveIntergenicRegion	0	7.11	3.44	5.92	12.50	18.24	9.36	1.43
96	IG41_AR1	ActiveIntergenicRegion	0	9.06	8.18	13.36	25.25	20.86	21.32	3.10