Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RAB11FIP3	Gene	0	22.51	23.00	46.43	60.42	60.69	46.94	59.76
2	262305	Transcript	0	31.07	31.91	63.64	78.50	86.08	51.14	85.31
3	ER1a	ExonRegion	0	4.65	8.42	9.64	22.52	10.00	16.82	14.50
4	E1a_E2a	KnownJunction	0	21.65	29.87	64.87	98.02	85.53	68.07	88.01
5	ER2a	ExonRegion	0	28.68	37.01	76.20	116.39	78.18	63.22	94.28
6	E2a_E3a	KnownJunction	0	40.21	38.07	83.97	113.08	87.60	64.27	113.07
7	ER3a	ExonRegion	0	32.98	41.84	66.64	92.80	79.30	62.35	114.01
8	E3a_E4a	KnownJunction	0	27.47	29.63	71.48	89.67	108.58	48.51	111.81
9	E3a_E5a	NovelJunction	1	3.10	1.42	2.90	15.04	4.24	3.70	2.38
10	ER4a	ExonRegion	0	25.87	37.42	59.41	80.12	82.18	56.79	97.71
11	E4a_E5a	KnownJunction	0	21.61	21.20	38.96	55.73	54.17	49.04	58.40
12	ER5a	ExonRegion	0	25.75	21.19	52.10	75.46	84.88	54.33	80.69
13	E5a_E6a	KnownJunction	1	12.17	10.75	13.67	30.80	42.51	1.66	40.93
14	I5_AR4	ActiveIntronRegion	0	5.38	1.21	12.57	3.05	8.73	1.23	6.60
15	I5_SR2	SilentIntronRegion	0	3.66	1.37	13.32	5.18	12.70	3.76	4.06
16	I5_AR7	ActiveIntronRegion	1	8.06	6.56	32.98	38.79	17.97	40.49	36.67
17	I5_AR10	ActiveIntronRegion	0	8.00	1.10	12.68	2.25	12.05	2.00	2.93
18	I5_SR5	SilentIntronRegion	0	4.29	2.29	8.03	2.73	14.20	0.39	2.66
19	I5_AR13	ActiveIntronRegion	0	8.29	2.71	13.10	4.17	15.02	2.79	6.48
20	ER6a	ExonRegion	1	16.33	19.30	28.69	42.64	52.37	13.96	52.69
21	E6_Da	NovelBoundary	1	10.08	3.76	21.08	7.53	26.35	6.89	5.73
22	E6a_E7a	KnownJunction	0	17.52	19.36	44.35	71.17	56.71	34.87	65.92
23	I6	Intron	0	9.17	4.39	14.75	8.65	21.02	7.83	7.70
24	I6_AR1	ActiveIntronRegion	0	10.18	5.85	16.24	10.71	20.95	10.07	7.44
25	I6_SR1	SilentIntronRegion	0	10.32	2.42	16.26	10.14	28.66	7.33	7.72
26	I6_AR3	ActiveIntronRegion	0	5.75	3.00	13.41	8.04	15.44	8.96	7.88
27	I6_AR4	ActiveIntronRegion	0	15.24	4.31	16.44	8.34	25.65	6.27	7.57
28	I6_AR5	ActiveIntronRegion	0	6.60	5.35	12.89	6.47	17.57	6.69	8.12
29	E7_Aa	NovelBoundary	0	10.00	6.70	11.25	15.09	10.42	4.77	5.86
30	ER7a	ExonRegion	0	27.75	27.49	56.91	82.35	61.54	43.07	77.05
31	E7a_E8a	KnownJunction	0	41.91	38.57	85.68	105.47	96.25	55.31	90.20
32	E7a_E9a	NovelJunction	1	1.72	0.00	2.74	10.16	0.00	1.66	0.00
33	E8_Aa	NovelBoundary	1	17.24	0.00	31.44	1.68	0.00	1.07	0.00
34	ER8a	ExonRegion	0	31.65	29.29	66.63	73.47	93.58	33.61	78.67
35	E8a_E9a	KnownJunction	0	33.30	25.17	59.09	64.99	71.07	39.93	66.08
36	ER9a	ExonRegion	0	40.76	33.22	90.44	82.32	111.27	49.39	94.41
37	E9a_E10a	KnownJunction	0	41.06	54.01	100.76	81.76	117.80	69.36	111.64
38	E10_Aa	NovelBoundary	1	19.43	1.55	41.34	1.68	1.18	0.00	2.32
39	ER10a	ExonRegion	0	52.21	37.82	95.71	103.86	113.06	55.26	115.89
40	E10a_E11a	KnownJunction	0	46.80	30.76	78.23	66.62	88.73	48.51	99.03
41	I10_AR2	ActiveIntronRegion	1	0.77	1.21	4.06	10.97	1.62	15.94	4.18
42	E11_Aa	NovelBoundary	0	1.77	11.90	4.93	9.67	0.00	6.22	3.57
43	ER11a	ExonRegion	0	46.40	40.59	82.42	91.62	117.71	69.24	114.21
44	E11a_E12a	KnownJunction	0	38.20	42.74	64.85	75.75	109.04	40.68	82.42
45	ER12a	ExonRegion	0	23.02	33.98	42.60	66.11	83.39	50.43	66.59
46	E12a_E13a	KnownJunction	0	30.14	35.07	53.03	90.38	122.48	64.29	98.34
47	ER13a	ExonRegion	0	43.02	41.62	86.22	88.74	136.82	85.91	102.90
48	E13a_E14a	KnownJunction	0	43.31	54.70	94.80	93.49	115.75	84.42	113.71
49	ER14a	ExonRegion	0	24.54	22.49	50.85	64.14	63.54	57.39	60.10
50	IG28_AR1	ActiveIntergenicRegion	0	3.47	2.55	6.70	4.33	7.76	5.91	8.85