Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MMP25	Gene	0	15.39	18.56	4.56	8.77	68.19	13.12	19.00
2	325800	Transcript	0	5.80	8.43	3.04	3.91	2.91	4.15	3.61
3	336577	Transcript	0	10.52	11.07	2.44	6.49	74.43	10.11	19.19
4	IG34	Intergenic	0	7.76	5.94	1.12	5.60	2.32	10.29	7.81
5	IG34_SR1	SilentIntergenicRegion	0	8.85	6.47	1.26	6.13	2.47	11.04	8.95
6	ER1a	ExonRegion	0	0.75	1.89	0.30	1.68	7.69	3.83	1.61
7	E1a_E2a	KnownJunction	0	0.00	1.02	0.00	0.00	20.54	0.00	5.35
8	I1	Intron	0	4.10	4.87	0.43	5.68	0.10	10.02	3.95
9	I1_SR1	SilentIntronRegion	0	4.12	4.89	0.43	5.70	0.10	10.06	3.97
10	E2_Aa	NovelBoundary	0	6.34	10.64	0.89	10.70	0.00	12.94	5.95
11	ER2a	ExonRegion	0	5.04	2.57	1.30	3.14	33.08	6.94	8.48
12	E2_Da	NovelBoundary	1	7.24	1.21	0.59	11.65	1.13	6.67	3.22
13	E2a_E3a	KnownJunction	0	1.62	3.60	0.86	1.68	60.21	2.79	10.78
14	E3_Aa	NovelBoundary	0	8.31	9.69	0.65	6.07	1.18	8.98	7.88
15	ER3a	ExonRegion	1	5.36	12.97	1.00	2.79	55.96	12.93	12.61
16	E3a_E4a	KnownJunction	0	8.60	9.98	1.54	4.61	75.61	5.44	19.00
17	E4_Aa	NovelBoundary	0	2.70	9.41	1.49	5.36	1.96	7.45	3.78
18	ER4a	ExonRegion	0	13.22	15.05	2.92	6.33	97.54	12.18	21.26
19	E4_Da	NovelBoundary	1	14.15	4.02	4.15	2.79	2.26	0.00	3.81
20	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E4b_E6a	KnownJunction	0	2.89	2.60	0.75	4.36	104.96	10.67	12.43
22	ER4b	ExonRegion	0	5.38	4.86	1.35	3.74	115.00	12.26	16.19
23	I4	Intron	0	27.72	19.12	12.57	21.30	10.74	16.45	20.91
24	I4_AR1	ActiveIntronRegion	0	25.56	14.28	14.33	19.08	7.41	15.15	16.62
25	I4_SR2	SilentIntronRegion	0	31.61	19.96	18.13	33.48	9.76	22.91	25.39
26	I4_AR2	ActiveIntronRegion	0	47.18	33.55	23.76	36.39	18.30	29.73	35.33
27	I4_SR3	SilentIntronRegion	1	7.52	16.37	2.89	15.72	4.58	12.26	16.69
28	I4_AR3	ActiveIntronRegion	1	22.39	50.42	15.45	60.39	14.58	27.01	46.70
29	I4_SR4	SilentIntronRegion	1	7.23	6.12	2.31	8.45	6.57	4.31	19.64
30	I4_AR4	ActiveIntronRegion	1	6.21	5.30	2.20	3.52	4.74	5.24	11.53
31	I4_SR5	SilentIntronRegion	0	24.45	10.06	2.93	4.41	9.56	6.54	10.62
32	I4_AR5	ActiveIntronRegion	0	20.71	10.56	6.08	11.20	8.00	7.80	10.11
33	E5_Aa	NovelBoundary	1	29.27	65.21	26.84	53.91	9.71	17.50	34.52
34	ER5a	ExonRegion	0	11.59	16.86	6.08	7.82	5.82	8.31	7.23
35	I5	Intron	0	10.10	6.90	3.69	6.52	3.84	4.36	8.01
36	I5_SR1	SilentIntronRegion	0	10.75	7.47	4.89	4.97	4.80	3.53	9.01
37	I5_AR2	ActiveIntronRegion	0	25.46	16.06	7.54	18.43	8.84	10.82	24.31
38	I5_AR3	ActiveIntronRegion	0	26.06	11.93	5.79	18.48	5.37	8.92	22.51
39	I5_AR4	ActiveIntronRegion	0	13.15	10.94	4.45	9.81	5.16	7.67	11.22
40	E6_Aa	NovelBoundary	0	10.16	8.54	1.52	7.31	5.33	12.19	14.15
41	ER6a	ExonRegion	0	13.74	22.07	7.23	13.45	78.13	22.33	28.12
42	E6_Da	NovelBoundary	0	13.60	16.92	3.64	11.95	5.42	11.66	9.34
43	E6a_E7a	KnownJunction	1	5.82	8.14	0.56	1.52	93.25	6.65	27.07
44	E7_Aa	NovelBoundary	0	20.01	17.08	6.34	7.56	6.36	10.13	20.21
45	ER7a	ExonRegion	0	12.74	8.76	2.22	7.76	120.35	7.51	25.40
46	E7_Da	NovelBoundary	1	15.25	4.20	4.41	4.28	4.63	0.00	2.95
47	E7a_E8a	KnownJunction	0	12.67	8.62	1.21	5.20	76.67	4.96	17.43
48	E8_Aa	NovelBoundary	1	22.88	7.38	15.88	17.64	2.86	4.40	3.93
49	ER8a	ExonRegion	0	20.83	11.01	5.46	7.26	66.68	10.13	24.38
50	E8_Da	NovelBoundary	1	30.54	4.57	14.00	14.52	4.17	6.06	8.50
51	E8a_E9a	KnownJunction	0	11.87	11.95	1.49	6.20	65.52	5.28	25.27
52	I8	Intron	0	9.82	2.16	5.26	4.04	3.11	0.85	2.15
53	I8_AR1	ActiveIntronRegion	0	9.90	2.18	5.30	4.06	3.13	0.85	2.17
54	E9_Aa	NovelBoundary	1	22.13	8.01	6.64	7.94	3.43	1.61	0.86
55	ER9a	ExonRegion	0	11.65	8.78	2.57	5.64	56.28	10.10	15.69
56	E9a_E10a	KnownJunction	1	7.16	7.43	0.56	1.19	60.63	11.42	14.82
57	ER10a	ExonRegion	0	7.86	14.63	2.11	7.20	29.82	11.66	11.08
58	E10_Da	NovelBoundary	0	7.73	20.81	3.15	8.89	0.00	6.51	4.99
59	E10a_E11a	KnownJunction	0	2.75	9.59	0.00	9.43	15.70	2.89	7.94
60	ER11a	ExonRegion	0	21.35	25.44	6.26	11.43	84.61	15.62	23.63
61	IG35	Intergenic	0	10.74	7.52	2.06	4.50	0.31	6.51	5.88
62	IG35_SR1	SilentIntergenicRegion	0	10.86	7.57	2.09	4.56	0.31	6.52	5.93