Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PIGQ	Gene	0	35.61	45.98	41.02	23.36	42.81	16.73	63.04
2	409527	Transcript	0	0.36	0.00	0.00	0.00	0.01	0.49	0.00
3	409439	Transcript	0	0.75	0.00	0.00	0.00	0.71	0.00	0.53
4	26218	Transcript	1	1.79	12.66	6.67	7.99	5.09	23.74	27.65
5	321878	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	0.60	0.00	0.00	0.00	0.00	0.00	0.00
7	E1a_E2a	KnownJunction	0	0.82	0.00	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	0.00	0.00	0.01	0.00	0.04	0.90	0.00
9	E2a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.05	0.00
10	ER3a	ExonRegion	0	1.51	0.00	0.00	0.00	0.49	0.00	0.18
11	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.92	0.00	0.89
12	ER4a	ExonRegion	0	3.22	5.73	1.30	3.77	4.55	0.00	2.08
13	E4a_E5a	KnownJunction	0	4.82	8.85	2.57	4.58	6.41	0.00	5.60
14	ER5a	ExonRegion	0	17.04	34.71	22.45	17.80	23.18	11.97	38.90
15	E5_Da	KnownBoundary	1	23.97	46.16	38.14	30.07	45.14	29.10	65.25
16	ER5b	ExonRegion	0	25.88	48.55	39.38	25.94	37.61	25.64	66.53
17	E5b_E6a	KnownJunction	0	54.06	69.70	66.20	38.50	55.42	34.68	84.77
18	ER6a	ExonRegion	0	41.91	66.28	57.25	32.62	52.96	20.26	79.03
19	E6_Da	NovelBoundary	0	9.81	18.89	7.36	7.07	10.05	3.99	19.68
20	E6a_E7a	KnownJunction	0	30.14	64.31	64.65	29.20	90.21	11.58	84.30
21	ER7a	ExonRegion	0	46.20	69.61	59.64	28.00	88.70	21.88	96.34
22	E7a_E8a	KnownJunction	0	57.93	70.78	80.46	34.89	79.95	22.75	105.12
23	I7_AR1	ActiveIntronRegion	0	2.95	2.76	5.41	2.34	10.92	1.54	1.64
24	ER8a	ExonRegion	0	60.66	94.58	76.83	35.43	76.45	26.92	119.40
25	E8a_E9a	KnownJunction	0	85.57	88.01	81.21	32.75	129.42	27.63	137.50
26	ER9a	ExonRegion	0	90.79	91.61	103.25	32.53	126.48	21.79	165.15
27	E9_Da	NovelBoundary	0	6.26	10.27	1.41	9.24	1.01	1.07	6.97
28	E9a_E10a	KnownJunction	0	86.97	75.66	89.48	27.42	95.55	15.33	146.55
29	ER10a	ExonRegion	0	81.53	68.99	96.11	24.58	90.49	23.56	153.61
30	E10a_E11a	KnownJunction	0	87.77	64.97	109.72	25.74	124.02	23.34	170.21
31	E10a_E12a	NovelJunction	0	2.75	17.21	2.30	5.58	2.14	7.80	9.42
32	ER11a	ExonRegion	0	81.25	56.96	89.82	28.13	99.31	19.19	126.72
33	E11_Da	NovelBoundary	1	9.08	2.26	14.86	8.13	9.91	1.66	4.86
34	E11a_E12a	KnownJunction	0	61.04	49.52	60.18	20.40	29.53	22.57	72.35
35	ER12a	ExonRegion	0	43.24	51.48	46.57	19.26	46.86	21.17	66.06
36	E12a_E13a	KnownJunction	0	28.09	20.65	38.91	13.30	17.15	8.71	37.30
37	E12a_E14a	KnownJunction	1	1.79	12.66	6.67	7.99	5.09	23.74	27.65
38	I12	Intron	0	5.78	4.82	4.29	3.44	10.66	0.94	4.15
39	I12_AR1	ActiveIntronRegion	0	5.38	8.03	4.50	2.85	11.66	0.50	3.83
40	I12_SR1	SilentIntronRegion	0	8.70	6.86	8.03	3.87	11.24	0.00	3.37
41	I12_AR2	ActiveIntronRegion	0	10.13	7.91	7.71	5.89	16.28	1.94	8.51
42	I12_SR2	SilentIntronRegion	0	4.93	1.91	4.28	2.19	9.99	0.74	1.49
43	ER13a	ExonRegion	0	30.12	31.45	38.21	24.13	27.67	13.51	33.08
44	E13a_E14a	KnownJunction	0	33.91	35.89	35.35	33.81	47.35	21.95	49.59
45	ER14a	ExonRegion	0	41.01	58.42	44.18	34.47	52.34	26.56	69.09
46	E14_Da	KnownBoundary	0	50.50	82.31	59.08	61.47	81.79	29.72	93.03
47	ER14b	ExonRegion	0	36.81	45.70	38.15	28.07	36.35	18.32	57.11
48	IG30_AR2	ActiveIntergenicRegion	0	8.19	7.92	5.41	4.80	5.13	0.73	1.67