Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CHD2	Gene	0	167.22	480.04	129.46	453.15	83.21	417.11	59.34
2	309818	Transcript	0	7.49	7.11	5.96	5.49	2.59	2.67	2.64
3	394196	Transcript	0	416.79	747.15	228.44	744.67	175.18	749.37	114.34
4	IG50_AR9	ActiveIntergenicRegion	0	10.51	0.00	7.10	0.00	4.96	0.80	0.24
5	IG50_AR11	ActiveIntergenicRegion	0	10.86	3.40	10.75	2.49	1.89	0.00	1.66
6	IG50_SR10	SilentIntergenicRegion	0	11.66	4.82	9.00	2.89	1.39	0.57	1.35
7	IG50_AR18	ActiveIntergenicRegion	0	1.82	16.81	1.26	11.90	4.59	14.75	0.75
8	IG50_SR15	SilentIntergenicRegion	0	11.56	11.97	6.52	13.15	0.69	11.22	0.26
9	IG50_AR19	ActiveIntergenicRegion	0	45.13	26.59	41.62	13.20	4.18	11.48	0.88
10	IG50_SR16	SilentIntergenicRegion	0	101.51	35.23	112.26	18.92	4.54	14.74	2.02
11	IG50_AR20	ActiveIntergenicRegion	0	293.10	294.87	291.80	178.56	52.29	299.97	22.70
12	IG50_SR17	SilentIntergenicRegion	0	244.23	85.73	186.77	41.12	20.36	27.02	12.37
13	IG50_AR21	ActiveIntergenicRegion	0	202.47	35.31	142.63	22.38	16.56	11.78	6.77
14	IG50_SR18	SilentIntergenicRegion	0	113.42	17.97	78.52	18.26	11.25	6.24	4.88
15	IG50_AR22	ActiveIntergenicRegion	0	177.00	86.60	170.07	51.39	185.50	105.88	18.21
16	IG50_SR19	SilentIntergenicRegion	0	39.43	6.28	26.63	3.82	1.66	5.34	1.63
17	IG50_AR23	ActiveIntergenicRegion	0	39.45	10.12	26.87	6.44	1.89	5.31	2.02
18	IG50_SR20	SilentIntergenicRegion	0	42.75	16.68	33.19	9.64	2.43	15.60	2.88
19	IG50_AR24	ActiveIntergenicRegion	0	477.27	285.82	372.26	208.84	173.47	357.53	38.22
20	IG50_SR21	SilentIntergenicRegion	0	219.05	41.54	112.60	19.60	32.35	24.07	12.81
21	IG50_AR25	ActiveIntergenicRegion	0	188.43	41.44	94.16	27.32	29.35	23.72	12.75
22	IG50_SR22	SilentIntergenicRegion	0	228.78	32.92	115.93	26.28	25.59	18.05	14.57
23	IG50_AR26	ActiveIntergenicRegion	0	129.23	40.94	91.20	19.71	25.64	15.05	13.88
24	IG50_SR23	SilentIntergenicRegion	0	107.79	18.35	79.57	5.81	15.14	7.62	7.57
25	IG50_AR27	ActiveIntergenicRegion	0	140.37	32.19	100.14	10.60	11.34	11.44	11.69
26	IG50_AR28	ActiveIntergenicRegion	0	131.64	28.18	88.12	13.95	18.81	19.33	11.30
27	IG50_AR29	ActiveIntergenicRegion	0	175.39	49.01	118.73	20.51	35.81	21.64	24.49
28	IG50_SR25	SilentIntergenicRegion	0	76.64	29.13	58.87	10.41	20.19	12.04	11.61
29	IG50_AR30	ActiveIntergenicRegion	0	125.09	52.37	79.90	19.54	30.85	11.19	14.16
30	IG50_SR26	SilentIntergenicRegion	0	144.42	58.01	104.01	26.27	30.83	16.17	19.06
31	IG50_AR31	ActiveIntergenicRegion	0	155.52	38.47	129.07	17.11	112.91	12.41	14.21
32	IG50_SR27	SilentIntergenicRegion	0	144.44	27.94	133.03	25.93	21.82	19.96	16.03
33	IG50_SR28	SilentIntergenicRegion	0	112.39	24.53	112.11	17.05	13.68	10.69	11.51
34	IG50_AR32	ActiveIntergenicRegion	0	105.65	13.69	92.12	6.72	16.33	12.44	7.42
35	IG50_SR29	SilentIntergenicRegion	0	14.22	1.62	7.68	0.83	0.40	1.63	0.67
36	IG50_AR33	ActiveIntergenicRegion	0	76.12	21.86	71.49	12.37	11.98	7.61	7.39
37	IG50_SR30	SilentIntergenicRegion	0	48.14	18.65	46.96	6.65	9.71	4.55	7.04
38	IG50_AR34	ActiveIntergenicRegion	0	77.27	41.92	70.80	37.30	14.95	19.43	13.47
39	IG50_SR31	SilentIntergenicRegion	0	67.03	25.29	67.00	17.97	14.99	14.83	11.01
40	IG50_AR35	ActiveIntergenicRegion	0	133.46	81.15	108.54	64.42	45.42	102.53	16.98
41	ER1a	ExonRegion	0	3.92	3.89	3.97	2.33	2.75	1.84	1.09
42	E1_Ab	KnownBoundary	0	9.36	11.43	5.88	6.15	7.19	3.94	4.34
43	ER1b	ExonRegion	0	114.74	350.53	85.89	361.19	61.89	307.72	27.80
44	E1_Da	NovelBoundary	1	62.82	23.07	44.25	34.84	29.00	8.09	4.39
45	E1a_E2a	KnownJunction	0	93.25	399.98	95.91	395.91	43.36	370.13	37.88
46	E1a_E3a	NovelJunction	1	6.61	75.14	5.63	20.05	0.00	21.20	5.46
47	I1	Intron	0	46.05	31.54	29.87	21.57	17.71	13.59	5.39
48	I1_AR1	ActiveIntronRegion	0	46.30	31.71	30.03	21.67	17.81	13.66	5.42
49	E2_Aa	NovelBoundary	0	58.78	39.41	37.65	29.50	18.37	35.03	7.37
50	ER2a	ExonRegion	0	97.72	488.55	131.05	435.56	70.34	372.59	42.79
51	E2_Da	NovelBoundary	1	138.68	62.29	66.36	82.95	43.80	21.25	8.13
52	E2a_E3a	KnownJunction	0	53.06	523.17	94.76	478.35	50.67	411.16	62.71
53	I2_AR1	ActiveIntronRegion	0	46.04	44.44	33.22	28.22	20.37	11.78	4.53
54	ER3a	ExonRegion	0	77.74	664.28	106.30	542.89	47.98	405.65	61.32
55	E3a_E4a	KnownJunction	0	125.34	711.04	146.84	652.46	56.02	446.00	73.81
56	ER4a	ExonRegion	0	109.97	646.47	120.60	602.90	60.14	424.04	79.04
57	E4a_E5a	KnownJunction	0	75.97	508.12	95.65	469.98	44.61	390.10	58.20
58	E4a_E6a	NovelJunction	1	26.54	60.48	16.54	66.78	0.99	52.47	1.46
59	E4a_E7a	NovelJunction	1	5.87	58.48	4.15	14.49	0.00	8.90	0.00
60	ER5a	ExonRegion	0	103.80	508.01	119.44	524.23	53.96	432.03	56.48
61	E5a_E6a	KnownJunction	0	137.69	531.52	131.78	582.16	80.73	478.40	53.16
62	E5a_E7a	NovelJunction	1	8.70	32.34	6.81	27.17	0.00	9.57	3.01
63	ER6a	ExonRegion	0	148.91	586.73	151.09	617.44	79.40	518.90	79.15
64	E6a_E7a	KnownJunction	0	175.21	666.51	164.43	665.82	93.53	528.76	78.12
65	ER7a	ExonRegion	0	197.83	742.78	186.76	707.23	85.72	512.01	81.42
66	E7a_E8a	KnownJunction	0	175.26	763.61	157.25	682.34	68.40	417.06	80.69
67	ER8a	ExonRegion	0	180.87	732.07	184.33	717.37	88.07	490.37	83.39
68	E8a_E9a	KnownJunction	0	149.66	749.79	133.54	728.94	66.85	484.91	74.65
69	ER9a	ExonRegion	0	191.87	672.25	202.01	680.98	80.66	468.08	77.51
70	E9a_E10a	KnownJunction	0	229.97	520.73	240.44	687.65	99.98	559.31	80.37
71	E9a_E11a	NovelJunction	1	42.03	195.46	5.46	29.10	2.12	25.49	0.64
72	ER10a	ExonRegion	0	234.59	446.89	237.80	603.94	89.20	473.78	82.21
73	E10a_E11a	KnownJunction	0	228.65	374.39	221.23	494.76	84.05	360.67	60.74
74	ER11a	ExonRegion	0	334.88	515.45	275.45	599.18	100.46	497.62	83.89
75	E11a_E12a	KnownJunction	0	330.11	559.98	238.71	560.33	107.43	485.67	74.67
76	ER12a	ExonRegion	0	293.16	578.24	234.60	605.40	88.46	470.02	83.37
77	E12_Da	NovelBoundary	1	84.53	129.78	28.08	107.31	0.00	58.66	2.79
78	E12a_E13a	KnownJunction	0	205.12	450.79	190.19	445.22	113.21	360.83	76.92
79	E12a_E14a	NovelJunction	0	7.29	16.21	2.30	23.54	0.00	12.78	0.00
80	I12_AR1	ActiveIntronRegion	0	37.18	66.44	26.92	54.64	3.00	27.46	3.27
81	ER13a	ExonRegion	0	145.93	557.02	162.20	500.64	70.67	418.97	68.49
82	E13a_E14a	KnownJunction	0	94.21	459.57	119.62	378.49	59.91	324.38	48.44
83	ER14a	ExonRegion	0	126.06	458.61	139.28	465.71	66.21	331.17	49.95
84	E14a_E15a	KnownJunction	0	154.65	408.60	143.80	426.74	49.75	289.57	38.78
85	ER15a	ExonRegion	0	132.87	458.77	136.97	420.70	65.99	288.70	45.95
86	E15a_E16a	KnownJunction	0	100.74	435.92	91.97	398.29	64.78	288.10	38.14
87	E15a_E17a	NovelJunction	0	20.24	24.06	11.81	26.55	1.15	14.36	2.14
88	ER16a	ExonRegion	0	103.34	344.21	117.01	288.83	47.62	269.76	32.07
89	E16a_E17a	KnownJunction	0	79.58	300.70	82.37	242.76	39.67	212.87	19.86
90	ER17a	ExonRegion	0	99.79	410.87	107.72	333.20	44.42	271.69	34.76
91	E17a_E18a	KnownJunction	0	143.85	510.38	131.57	442.56	60.10	327.68	38.39
92	ER18a	ExonRegion	0	210.09	554.30	179.55	482.61	76.42	356.55	50.31
93	E18a_E19a	KnownJunction	0	262.57	546.05	190.71	572.54	102.52	391.95	51.12
94	ER19a	ExonRegion	0	316.64	696.89	225.89	620.32	110.75	490.63	59.87
95	E19a_E20a	KnownJunction	0	257.36	642.21	161.97	602.64	68.63	473.31	53.26
96	ER20a	ExonRegion	0	242.62	568.32	150.44	500.29	89.58	383.99	51.11
97	E20_Da	NovelBoundary	1	49.29	13.77	25.87	10.57	3.07	3.35	5.00
98	E20a_E21a	KnownJunction	0	155.60	465.58	123.87	424.87	89.45	321.70	48.20
99	I20_AR1	ActiveIntronRegion	0	45.84	25.50	33.49	12.33	3.82	5.95	6.10
100	ER21a	ExonRegion	0	119.01	474.05	112.04	411.95	65.56	318.21	43.83
101	E21a_E22a	KnownJunction	0	107.67	430.93	104.96	387.67	47.30	319.59	34.74
102	I21	Intron	1	36.53	16.02	20.15	13.49	1.57	8.48	2.37
103	I21_SR1	SilentIntronRegion	0	38.68	16.96	21.34	14.28	1.66	8.98	2.51
104	ER22a	ExonRegion	0	86.80	386.37	100.86	345.03	48.47	267.26	40.79
105	E22a_E23a	KnownJunction	0	81.70	331.10	101.15	322.60	35.75	271.29	39.44
106	ER23a	ExonRegion	0	93.23	397.66	112.59	386.03	48.53	308.33	43.74
107	E23a_E24a	KnownJunction	0	138.74	430.48	125.48	437.03	56.06	373.13	54.22
108	ER24a	ExonRegion	0	129.73	483.32	120.54	433.74	70.29	385.20	59.29
109	E24a_E25a	KnownJunction	0	98.77	528.77	100.72	401.87	72.50	370.29	62.67
110	I24_SR1	SilentIntronRegion	0	34.96	24.11	13.49	15.73	3.20	8.00	2.47
111	E25_Aa	NovelBoundary	1	48.88	15.37	47.90	10.67	0.90	6.70	2.79
112	ER25a	ExonRegion	0	136.53	538.72	128.87	518.42	71.14	410.80	67.12
113	E25a_E26a	KnownJunction	0	118.43	473.75	109.39	428.12	93.29	339.53	61.42
114	ER26a	ExonRegion	0	107.29	486.22	106.16	468.69	74.29	325.19	56.60
115	E26a_E27a	KnownJunction	0	100.31	377.02	98.54	401.35	66.28	278.37	36.90
116	E26a_E28a	NovelJunction	1	0.00	10.46	0.53	15.04	0.00	2.12	0.00
117	ER27a	ExonRegion	0	92.14	442.96	100.08	430.26	74.68	290.27	40.33
118	E27a_E28a	KnownJunction	0	56.85	383.27	80.01	357.82	71.76	247.90	31.89
119	ER28a	ExonRegion	0	85.55	423.98	109.43	410.78	75.43	307.99	50.18
120	E28a_E29a	KnownJunction	0	61.25	342.63	86.29	308.38	80.02	264.22	43.97
121	I28_AR1	ActiveIntronRegion	0	34.00	23.60	17.15	21.12	4.16	12.11	7.87
122	E29_Aa	NovelBoundary	1	55.64	25.96	17.16	12.68	4.03	20.64	8.24
123	ER29a	ExonRegion	0	151.09	463.54	144.78	453.71	81.92	329.41	55.08
124	E29a_E30a	KnownJunction	0	140.01	445.22	114.11	434.05	71.56	336.93	53.03
125	ER30a	ExonRegion	0	199.69	524.18	155.30	475.70	78.49	433.98	63.47
126	E30a_E31a	KnownJunction	0	113.84	382.91	91.70	367.68	64.18	351.67	51.51
127	E30a_E32a	NovelJunction	0	9.10	12.48	9.79	17.58	0.00	20.64	0.54
128	I30	Intron	0	51.68	23.34	21.49	12.77	6.23	13.72	5.08
129	I30_AR1	ActiveIntronRegion	0	66.14	22.15	26.25	13.29	7.78	12.74	6.17
130	I30_SR1	SilentIntronRegion	0	60.76	32.69	24.93	17.30	8.05	23.17	6.21
131	ER31a	ExonRegion	0	137.79	432.49	118.98	439.82	62.56	366.02	54.12
132	E31_Da	NovelBoundary	1	50.92	40.51	22.48	23.27	4.26	27.36	2.42
133	E31a_E32a	KnownJunction	0	117.81	456.20	117.75	480.84	61.55	362.12	49.57
134	I31	Intron	0	61.82	33.67	35.40	23.36	7.79	23.54	5.51
135	I31_AR2	ActiveIntronRegion	0	84.57	51.82	48.75	37.29	11.01	40.42	8.40
136	I31_SR3	SilentIntronRegion	0	49.60	14.93	28.65	11.05	5.51	8.43	3.69
137	I31_AR3	ActiveIntronRegion	0	73.38	26.67	35.90	17.49	7.67	14.70	5.40
138	E32_Aa	NovelBoundary	1	45.16	14.40	26.59	8.75	5.37	9.33	4.54
139	ER32a	ExonRegion	0	198.57	628.46	179.22	611.38	82.25	534.17	70.16
140	E32_Da	NovelBoundary	0	73.35	32.24	28.27	11.13	1.18	13.72	11.91
141	E32a_E33a	KnownJunction	0	130.50	523.17	149.65	590.13	98.53	509.52	59.46
142	I32_AR1	ActiveIntronRegion	0	40.41	27.38	17.72	7.59	3.91	7.88	6.53
143	ER33a	ExonRegion	0	226.42	718.08	207.67	718.44	122.51	683.45	85.49
144	E33a_E34a	KnownJunction	0	304.99	683.58	223.01	708.49	205.59	679.56	88.28
145	E33a_E35a	NovelJunction	0	7.19	11.40	7.80	13.98	0.88	5.60	2.92
146	ER34a	ExonRegion	0	271.18	845.27	234.47	853.77	146.79	789.49	104.48
147	E34a_E35a	KnownJunction	0	324.87	837.27	204.72	912.75	153.39	820.31	91.22
148	ER35a	ExonRegion	0	420.62	871.95	286.92	920.55	186.49	835.77	115.81
149	E35a_E36a	KnownJunction	0	387.86	752.76	272.98	811.89	148.51	792.84	95.78
150	ER36a	ExonRegion	0	479.45	837.06	330.86	848.11	185.80	878.16	123.74
151	E36a_E37a	KnownJunction	0	408.92	888.71	283.02	831.83	94.49	879.68	114.68
152	ER37a	ExonRegion	0	321.40	917.52	236.02	825.73	152.82	888.11	117.28
153	E37a_E38a	KnownJunction	0	273.85	946.61	197.38	829.80	168.56	945.76	104.46
154	E38_Aa	NovelBoundary	1	113.81	19.60	76.75	11.73	0.88	13.69	5.42
155	ER38a	ExonRegion	0	381.58	1029.22	228.43	1018.75	208.06	1037.24	138.43
156	E38_Da	KnownBoundary	0	19.23	4.33	8.68	8.29	3.34	7.53	2.25
157	E38a_E39a	KnownJunction	0	607.35	906.71	309.02	951.14	229.61	929.26	149.73
158	ER38b	ExonRegion	0	11.05	10.32	7.95	8.64	2.42	3.49	4.19
159	ER39a	ExonRegion	0	226.23	587.60	147.87	538.20	120.76	569.49	78.95