Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 SCAPER Gene 0 43.52 21.73 30.44 16.81 14.68 16.58 13.29 2 303521 Transcript 0 21.94 12.55 18.59 8.19 4.82 4.82 5.28 3 324767 Transcript 0 34.88 20.77 23.28 16.00 19.11 18.00 14.11 4 ER1a ExonRegion 0 12.96 6.47 9.94 5.70 2.19 1.38 2.05 5 E1a_E2a KnownJunction 1 53.29 29.42 43.27 25.90 9.94 6.08 8.83 6 E2_Ab NovelBoundary 1 37.40 24.01 35.83 25.17 12.17 4.23 7.51 7 ER2a ExonRegion 1 41.76 24.39 38.04 21.20 13.49 6.04 7.78 8 ER2b ExonRegion 1 21.93 23.52 20.65 14.52 6.40 4.81 4.67 9 E2a_E3a KnownJunction 1 10.36 19.94 1.45 8.86 3.43 2.41 0.89 10 E2a_E4a KnownJunction 0 0.00 0.00 0.00 1.16 0.00 2.84 0.77 11 ER3a ExonRegion 1 30.24 28.17 28.83 22.08 5.26 9.56 7.25 12 E3a_E4a KnownJunction 0 58.18 36.18 53.86 22.89 11.48 19.83 13.37 13 ER4a ExonRegion 0 38.29 31.76 36.21 17.02 11.67 17.58 10.16 14 E4a_E5a KnownJunction 0 28.67 21.38 20.36 14.41 6.02 11.07 4.14 15 ER5a ExonRegion 0 57.24 46.18 49.07 36.02 15.01 26.19 18.02 16 E5a_E6a KnownJunction 0 54.91 59.98 46.82 38.52 12.61 25.06 22.30 17 ER6a ExonRegion 0 62.24 58.75 45.90 40.53 22.91 31.60 18.83 18 E6a_E7a KnownJunction 0 73.34 41.64 36.57 39.23 29.23 32.32 22.94 19 E7_Aa NovelBoundary 1 32.96 0.00 14.08 0.00 0.00 0.00 0.00 20 ER7a ExonRegion 0 55.20 51.43 44.72 39.71 18.70 30.07 24.05 21 E7a_E8a KnownJunction 0 38.92 40.41 27.76 30.15 17.36 14.07 12.15 22 ER8a ExonRegion 0 45.39 36.02 29.89 35.71 17.89 18.05 16.52 23 E8a_E9a KnownJunction 0 42.96 20.39 25.52 15.01 15.81 10.00 8.83 24 ER9a ExonRegion 0 86.95 44.13 55.22 28.73 23.13 21.79 21.01 25 E9a_E10a KnownJunction 0 95.38 43.43 65.14 30.31 22.04 17.74 23.80 26 ER10a ExonRegion 0 74.81 38.34 61.50 28.74 18.84 21.05 21.79 27 E10_Da NovelBoundary 0 13.02 4.78 10.09 1.33 4.06 2.14 4.07 28 E10a_E11a KnownJunction 0 47.05 17.39 25.08 16.96 6.04 19.59 11.02 29 E10b_E11a KnownJunction 1 14.55 15.29 14.80 1.46 3.00 9.62 7.45 30 ER10b ExonRegion 1 17.89 11.54 16.26 1.25 4.27 6.95 7.20 31 ER11a ExonRegion 0 72.54 49.68 55.67 29.47 22.67 34.82 20.58 32 E11a_E12a KnownJunction 0 64.27 54.09 47.70 37.58 20.84 22.73 21.70 33 ER12a ExonRegion 0 83.45 38.28 51.53 31.35 20.54 28.63 20.13 34 E12a_E13a KnownJunction 0 78.91 32.02 49.26 25.44 26.12 34.87 17.87 35 ER13a ExonRegion 0 64.54 32.41 51.29 22.18 23.34 29.21 17.54 36 E13a_E14a KnownJunction 1 91.03 48.26 54.41 34.49 18.35 41.94 12.63 37 ER14a ExonRegion 0 63.18 44.64 60.12 37.83 12.49 40.91 17.95 38 E14a_E15a KnownJunction 0 70.73 42.77 52.15 38.25 10.86 26.75 18.40 39 ER15a ExonRegion 0 56.16 27.97 45.72 27.27 16.37 24.00 19.13 40 E15a_E16a KnownJunction 0 43.29 26.85 54.55 28.80 12.49 33.18 26.58 41 ER16a ExonRegion 0 41.78 23.60 38.63 26.77 11.38 21.23 18.53 42 E16a_E17a KnownJunction 0 39.97 26.80 31.96 25.87 13.42 11.01 15.66 43 ER17a ExonRegion 0 39.42 24.78 35.35 20.78 12.84 14.88 14.47 44 E17a_E18a KnownJunction 0 53.22 26.51 48.80 19.21 11.87 21.39 17.89 45 ER18a ExonRegion 0 42.48 27.13 31.30 22.46 11.09 18.73 15.16 46 E18a_E19a KnownJunction 0 38.99 19.28 31.18 19.91 15.61 17.55 14.19 47 ER19a ExonRegion 0 63.29 31.40 48.01 27.12 15.93 24.57 20.56 48 E19a_E20a KnownJunction 0 57.96 36.65 47.75 33.08 14.73 26.02 19.75 49 ER20a ExonRegion 0 59.48 35.49 38.16 25.91 9.69 22.66 14.98 50 E20a_E21a KnownJunction 1 47.75 27.19 21.31 17.09 9.18 7.80 9.16 51 I20_SR1 SilentIntronRegion 0 9.29 1.95 11.10 4.00 2.46 1.39 1.39 52 ER21a ExonRegion 0 40.40 25.85 23.37 15.59 9.78 18.44 11.00 53 E21a_E22a KnownJunction 0 51.46 22.02 17.86 14.87 9.52 19.27 9.03 54 ER22a ExonRegion 0 57.83 24.72 31.81 15.95 10.36 19.75 13.83 55 E22a_E23a KnownJunction 0 47.50 25.67 38.63 13.98 12.56 16.99 12.37 56 ER23a ExonRegion 0 48.02 25.94 36.83 13.92 15.26 20.34 13.57 57 E23a_E24a KnownJunction 1 47.43 22.83 36.08 5.99 20.77 12.44 12.33 58 ER24a ExonRegion 0 67.35 22.05 37.74 13.77 29.42 23.37 15.98 59 E24a_E25a KnownJunction 0 60.33 25.54 29.52 13.38 18.17 14.23 16.70 60 ER25a ExonRegion 0 84.81 19.17 48.90 16.16 35.25 25.22 22.95 61 E25a_E26a KnownJunction 0 96.33 16.71 45.02 18.86 37.97 20.10 19.48 62 ER26a ExonRegion 0 66.91 15.34 40.44 17.79 33.20 20.59 20.10 63 E26a_E27a KnownJunction 0 51.61 23.15 40.09 15.88 38.08 28.30 26.71 64 ER27a ExonRegion 0 51.71 26.21 34.21 17.13 35.65 28.90 22.38 65 E27a_E28a KnownJunction 0 78.93 26.85 48.03 15.25 34.74 23.72 20.61 66 ER28a ExonRegion 0 63.42 28.68 34.40 19.74 35.93 27.35 25.07 67 E28_Da KnownBoundary 0 2.67 0.00 3.36 0.00 0.00 0.00 0.89 68 E28a_E29a KnownJunction 0 30.43 15.00 23.12 15.96 21.12 22.22 25.68 69 ER28b ExonRegion 0 13.13 0.72 7.84 0.69 0.82 0.84 2.86 70 ER29a ExonRegion 0 30.65 17.73 22.42 16.82 24.47 16.86 16.51 71 E29a_E30a KnownJunction 0 29.22 22.59 20.46 9.35 42.14 15.06 17.28 72 ER30a ExonRegion 0 33.19 16.52 20.30 15.15 17.55 18.05 16.14 73 E30a_E31a KnownJunction 0 49.52 21.23 22.36 17.12 22.66 20.93 19.59 74 E31_Aa NovelBoundary 1 17.31 0.00 11.63 0.00 9.89 0.00 0.00 75 ER31a ExonRegion 0 37.28 19.67 20.44 18.42 30.57 25.35 18.97 76 E31a_E32a KnownJunction 0 22.77 20.39 16.04 16.74 28.33 27.90 12.38 77 ER32a ExonRegion 0 39.67 14.38 24.97 11.67 16.30 18.25 10.25