Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TPM1	Gene	0	961.97	714.88	1696.60	924.91	843.30	192.72	725.91
2	288398	Transcript	0	88.24	76.49	110.94	145.55	127.42	18.11	39.39
3	404484	Transcript	0	0	0	0	0	0	0	0
4	358278	Transcript	0	0	0	0	0	0	0	0
5	317516	Transcript	0	0	0	0	0	0	0	0
6	380364	Transcript	0	406.62	2.92	724.65	0.00	0.85	1.98	1.06
7	357980	Transcript	0	0.00	2.50	3.82	1.27	2.07	0.00	1.20
8	267996	Transcript	0	0	0	0	0	0	0	0
9	334895	Transcript	1	75.29	111.80	62.55	16.43	42.51	15.50	45.87
10	403994	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1a	ExonRegion	0	11.74	11.92	13.94	14.72	55.75	3.65	29.74
12	E1_Ab	KnownBoundary	0	39.64	53.59	53.08	59.95	111.21	12.46	88.22
13	ER1b	ExonRegion	0	211.29	343.09	430.44	598.24	248.84	92.30	268.02
14	E1a_E2a	KnownJunction	0	28.89	41.22	83.99	41.83	21.21	20.77	18.92
15	E1a_E3a	KnownJunction	1	289.32	612.23	617.64	1118.73	341.41	106.31	536.45
16	E1a_E5a	NovelJunction	0	5.96	20.20	6.14	12.35	4.38	7.29	5.59
17	I1_AR1	ActiveIntronRegion	0	125.96	143.08	177.74	92.18	8.40	21.88	15.61
18	ER2a	ExonRegion	0	127.60	108.66	277.37	74.67	45.69	46.43	29.00
19	E2a_E3a	KnownJunction	0	0.00	2.50	3.82	1.27	2.07	0.00	1.20
20	E2a_E5a	KnownJunction	1	104.58	65.52	354.72	78.24	43.78	45.91	33.28
21	ER3a	ExonRegion	0	964.52	896.99	1720.26	1563.44	972.46	222.69	845.70
22	E3a_E5a	KnownJunction	0	1430.06	1057.43	2203.27	1885.78	1594.57	245.49	968.93
23	ER4a	ExonRegion	0	9.39	18.96	5.09	4.70	6.86	1.88	6.20
24	E4_Ab	KnownBoundary	0	43.49	56.83	22.79	11.70	21.99	7.18	24.51
25	ER4b	ExonRegion	1	79.65	162.69	18.45	17.51	32.50	22.49	36.13
26	E4a_E5a	KnownJunction	1	179.12	369.11	7.99	9.56	78.49	49.77	114.54
27	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER5a	ExonRegion	0	1995.82	1906.18	3242.54	2284.89	1647.28	439.51	1430.96
29	E5_Da	NovelBoundary	0	2009.92	2354.84	3522.89	2583.11	1355.18	519.41	1611.67
30	E5a_E7b	KnownJunction	0	406.62	2.92	724.65	0.00	0.85	1.98	1.06
31	E5b_E6a	KnownJunction	0	2818.58	2816.27	4640.83	3175.65	1938.65	623.09	1943.63
32	ER5b	ExonRegion	0	2475.27	2654.07	4244.07	2990.62	1693.17	590.10	1870.14
33	ER6a	ExonRegion	0	3086.23	2558.32	4872.83	3037.55	2226.51	617.09	1999.14
34	E6a_E7a	KnownJunction	0	1824.64	1939.94	3397.81	2681.02	1995.34	491.43	1643.69
35	ER7a	ExonRegion	0	1690.13	1715.57	3108.27	2431.13	1918.10	419.14	1553.12
36	E7a_E8a	KnownJunction	0	1639.99	1398.11	2416.07	1613.52	1335.70	198.72	1249.46
37	E7a_E9a	KnownJunction	1	31.19	22.30	503.35	309.76	372.67	137.43	55.75
38	ER7b	ExonRegion	0	1641.38	1475.89	2939.93	2049.51	1731.79	346.88	1366.23
39	I7	Intron	0	91.56	188.39	153.06	179.49	13.68	26.32	27.53
40	I7_AR1	ActiveIntronRegion	0	99.85	204.52	166.81	193.22	14.49	29.33	29.00
41	I7_SR1	SilentIntronRegion	1	74.56	155.63	124.64	155.17	13.10	18.26	27.16
42	E8_Aa	NovelBoundary	0	143.08	289.64	245.93	295.48	24.87	47.60	45.30
43	ER8a	ExonRegion	0	1621.03	1450.43	2527.54	1565.56	1585.65	223.49	1359.55
44	E8a_E9a	NovelJunction	1	141.96	187.89	209.97	534.89	52.15	30.10	9.34
45	E8a_E10a	KnownJunction	0	1409.58	1380.75	2404.30	1501.58	1583.11	218.63	1518.26
46	I8	Intron	1	171.59	148.11	275.34	89.66	26.07	13.75	53.45
47	I8_AR1	ActiveIntronRegion	1	172.31	148.74	276.53	90.02	26.18	13.81	53.69
48	ER9a	ExonRegion	1	133.32	146.74	783.68	649.90	563.21	177.91	79.78
49	E9a_E10a	KnownJunction	1	153.56	226.38	851.27	922.78	583.05	208.48	96.14
50	ER10a	ExonRegion	0	1760.84	1581.51	3723.04	2416.79	2365.91	409.60	1721.55
51	E10a_E11a	KnownJunction	0	2042.25	1470.07	4019.87	2215.62	2164.45	367.88	1692.37
52	ER11a	ExonRegion	0	2346.79	1554.38	4734.87	2269.06	1760.67	389.46	1767.27
53	E11_Da	NovelBoundary	1	251.15	143.42	478.58	113.19	78.56	20.50	54.88
54	E11a_E12a	KnownJunction	1	63.52	205.76	87.59	699.49	214.25	55.10	47.48
55	E11a_E13a	NovelJunction	1	23.72	64.21	16.05	39.09	35.06	5.71	3.77
56	E11a_E14a	KnownJunction	0	0.62	1.44	0.00	1.60	9.59	0.00	0.00
57	E11a_E15a	KnownJunction	0	2253.02	1319.06	4398.34	1507.21	1444.44	382.46	1733.17
58	I11	Intron	1	307.16	105.70	560.15	123.22	109.57	16.38	63.01
59	I11_AR1	ActiveIntronRegion	1	307.58	105.85	560.93	123.39	109.72	16.40	63.09
60	E12_Aa	NovelBoundary	0	263.90	185.08	397.48	225.40	96.45	30.63	94.03
61	ER12a	ExonRegion	1	310.85	258.65	341.48	581.14	337.40	54.95	122.44
62	E12_Da	KnownBoundary	0	579.79	298.23	608.83	377.46	402.06	65.10	230.45
63	E12a_E13a	NovelJunction	1	13.60	43.01	51.37	299.11	49.29	19.11	6.84
64	ER12b	ExonRegion	1	204.75	118.26	207.02	160.49	215.73	26.25	73.04
65	E12_Db	NovelBoundary	0	273.00	190.91	348.71	209.63	337.38	30.23	96.68
66	E12b_E13a	KnownJunction	1	9.01	15.37	1.70	39.63	31.26	2.55	0.80
67	I12	Intron	0	238.97	94.11	359.61	95.55	104.12	17.30	50.36
68	I12_AR1	ActiveIntronRegion	0	239.34	94.24	360.15	95.69	104.27	17.33	50.43
69	ER13a	ExonRegion	0	50.95	95.85	124.10	236.52	135.25	25.55	44.33
70	ER14a	ExonRegion	0	112.02	57.68	237.14	49.87	75.10	10.36	62.76
71	ER15a	ExonRegion	0	2151.85	1314.53	3781.57	1627.07	1814.43	402.20	1623.99
72	ER15b	ExonRegion	0	419.34	163.11	726.83	232.52	603.61	75.48	307.14
73	IG20_SR1	SilentIntergenicRegion	0	4.11	2.06	16.36	6.75	1.28	2.48	1.93
74	IG20_SR2	SilentIntergenicRegion	0	2.34	1.08	10.00	5.72	0.23	0.77	1.80