Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SERF2	Gene	0	110.53	163.75	78.80	188.18	191.73	168.55	127.31
2	381359	Transcript	1	1.01	3.07	2.21	4.25	1.24	14.13	1.69
3	249786	Transcript	0	36.05	45.27	30.03	54.00	19.33	31.48	24.62
4	409646	Transcript	1	0.81	3.86	1.91	4.88	0.00	16.27	0.44
5	409960	Transcript	1	64.04	107.67	28.38	84.73	70.31	68.60	32.89
6	381357	Transcript	0	0	0	0	0	0	0	0
7	339624	Transcript	1	8.55	229.72	1.80	292.75	10.33	206.73	17.67
8	409291	Transcript	0	13.32	18.17	2.57	20.00	4.86	23.58	2.38
9	409617	Transcript	0	0.00	1.63	0.83	4.31	0.00	7.37	0.00
10	402131	Transcript	0	1.67	8.01	0.66	1.00	0.95	2.81	1.59
11	403425	Transcript	1	11.93	7.59	7.24	14.27	13.88	19.87	10.03
12	409614	Transcript	0	25.64	22.75	11.39	25.95	62.86	21.67	29.76
13	406925	Transcript	0	19.04	17.52	11.58	26.04	11.16	35.34	6.76
14	337861	Transcript	0	0	0	0	0	0	0	0
15	ER1a	ExonRegion	0	0.29	0.58	1.06	1.02	0.67	1.71	0.43
16	E1a_E2a	KnownJunction	0	0.00	3.76	3.22	1.54	1.13	10.69	0.89
17	I1_AR1	ActiveIntronRegion	1	4.85	11.08	5.45	25.29	1.22	41.93	1.38
18	ER2a	ExonRegion	0	2.26	5.46	2.68	6.30	0.73	21.37	3.60
19	E2a_E3a	KnownJunction	1	0.73	2.29	2.28	4.14	1.18	22.59	1.68
20	ER3a	ExonRegion	0	1.78	3.29	1.82	8.22	2.48	14.31	1.88
21	E3_Ab	KnownBoundary	0	2.84	1.52	2.77	6.15	0.00	6.51	0.83
22	ER3b	ExonRegion	0	19.75	36.26	15.49	33.59	134.34	25.00	33.53
23	E3_Ac	KnownBoundary	0	0.87	6.65	0.79	9.10	5.56	7.61	0.83
24	E3_Ad	KnownBoundary	0	2.55	1.47	0.00	0.00	122.27	0.00	2.59
25	E3_Ae	KnownBoundary	0	12.08	6.23	6.78	1.57	11.73	2.95	15.28
26	E3_Af	KnownBoundary	0	218.92	160.15	128.76	161.79	1437.51	127.94	189.83
27	ER3c	ExonRegion	0	333.25	385.11	167.09	354.97	1615.65	304.05	386.09
28	ER3d	ExonRegion	0	623.90	851.73	305.87	863.35	2910.24	717.54	961.11
29	E3_Ah	NovelBoundary	1	1113.94	1703.28	563.60	1810.39	5235.09	1328.71	2167.01
30	ER3e	ExonRegion	1	1267.66	1885.86	654.13	1981.01	5780.99	1447.90	2331.39
31	ER3f	ExonRegion	1	1386.15	2061.44	720.74	2151.19	6265.01	1567.52	2597.28
32	E3a_E4b	KnownJunction	0	3425.53	3381.74	1529.35	3613.52	7998.18	2801.62	5106.61
33	ER3g	ExonRegion	1	1734.09	2265.01	844.36	2403.52	7361.95	1795.74	3085.44
34	ER3h	ExonRegion	1	2555.97	2521.15	1087.06	2702.33	8650.13	2101.44	3647.75
35	ER3i	ExonRegion	0	11.23	17.25	7.72	19.93	6.99	22.96	7.10
36	E3_Db	KnownBoundary	0	15.61	14.06	14.11	22.76	3.00	25.92	9.70
37	E3b_E4b	KnownJunction	0	1.67	8.01	0.66	1.00	0.95	2.81	1.59
38	ER3j	ExonRegion	0	12.71	9.31	8.58	13.91	9.62	22.18	9.71
39	E3c_E4b	KnownJunction	0	11.15	5.86	5.91	14.63	18.14	17.55	10.35
40	ER4a	ExonRegion	0	25.64	22.75	11.39	25.95	62.86	21.67	29.76
41	E4_Ab	KnownBoundary	0	2.64	2.15	1.52	9.35	0.00	12.46	1.73
42	ER4b	ExonRegion	0	1686.12	2180.11	668.48	2032.23	2390.13	1824.06	2052.37
43	E4_Da	NovelBoundary	1	8.40	67.91	9.73	23.33	3.25	25.73	8.37
44	E4a_E5a	KnownJunction	0	0.58	24.56	1.25	36.36	0.00	28.54	3.75
45	E4a_E5b	KnownJunction	1	8.55	229.72	1.80	292.75	10.33	206.73	17.67
46	E4a_E5c	KnownJunction	1	456.24	2626.46	257.49	1897.14	237.44	1745.79	1021.52
47	E4a_E6b	KnownJunction	0	0.00	1.42	3.29	4.04	0.00	6.49	0.00
48	E4a_E6c	KnownJunction	0	1.50	8.35	0.65	11.11	0.00	18.22	0.00
49	E4a_E7a	KnownJunction	0	0.00	1.63	0.83	4.31	0.00	7.37	0.00
50	I4	Intron	1	57.77	95.34	27.98	46.91	65.25	38.56	33.86
51	I4_AR1	ActiveIntronRegion	1	58.00	95.70	28.08	47.09	65.50	38.71	33.99
52	E5_Aa	NovelBoundary	1	100.59	166.59	28.01	63.53	99.86	62.74	48.88
53	ER5a	ExonRegion	1	127.49	190.78	55.50	133.11	140.62	108.66	62.03
54	E5_Ab	KnownBoundary	0	87.74	159.10	35.49	103.46	96.27	72.44	50.33
55	E5_Ac	KnownBoundary	0	56.18	358.29	26.63	361.91	24.97	297.45	44.59
56	ER5b	ExonRegion	0	127.19	570.30	58.76	535.54	83.17	429.26	147.12
57	ER5c	ExonRegion	0	1405.85	2309.76	692.50	2019.13	2844.70	2022.51	1951.43
58	E5_Da	KnownBoundary	0	303.74	743.27	205.44	628.89	168.17	887.55	359.86
59	ER5d	ExonRegion	0	226.19	418.15	166.59	402.22	283.00	505.40	278.38
60	E5_Db	KnownBoundary	0	87.05	56.30	76.31	67.51	31.95	40.84	40.51
61	ER5e	ExonRegion	1	79.35	64.95	75.45	76.49	33.96	35.07	38.87
62	E5_Dc	KnownBoundary	0	30.16	20.99	22.26	16.93	8.69	8.76	14.69
63	ER5f	ExonRegion	0	15.72	5.80	12.84	12.42	11.65	5.63	6.10
64	E5_Dd	KnownBoundary	0	0.65	3.99	0.55	3.63	0.00	1.45	1.43
65	ER5g	ExonRegion	0	36.05	45.27	30.03	54.00	19.33	31.48	24.62
66	ER6a	ExonRegion	1	39.68	27.12	22.63	20.39	28.07	25.34	11.65
67	E6_Ab	KnownBoundary	1	27.00	16.24	11.48	29.26	8.25	54.22	5.16
68	ER6b	ExonRegion	1	32.13	27.67	13.77	47.25	11.37	64.32	5.65
69	E6_Da	KnownBoundary	0	26.75	18.94	13.21	19.05	5.05	27.58	5.29
70	E6a_E6c	KnownJunction	1	1.62	6.31	0.53	5.72	0.00	26.05	0.89
71	ER6c	ExonRegion	1	23.24	23.97	9.57	29.91	7.82	29.01	8.04
72	E6_Ac	KnownBoundary	0	22.05	18.34	5.14	31.18	4.36	25.86	7.34
73	ER6d	ExonRegion	1	27.97	42.21	18.20	65.23	9.52	107.01	8.84
74	E6_Db	KnownBoundary	1	15.29	21.17	13.74	38.25	5.35	87.37	2.98
75	ER6e	ExonRegion	1	16.94	27.99	7.20	48.24	5.73	65.18	6.84
76	E6_Dc	KnownBoundary	0	15.45	21.96	2.50	24.17	4.40	22.75	5.70
77	E6c_E7a	KnownJunction	1	8.85	5.60	2.97	38.25	4.22	68.39	0.64
78	ER6f	ExonRegion	1	25.14	27.98	4.49	28.90	9.72	28.94	4.77
79	E6_Dd	NovelBoundary	1	37.52	35.34	10.63	42.05	15.72	55.02	5.78
80	Ix	Intron	0	23.07	23.97	6.93	26.42	9.38	36.34	4.97
81	Ix_AR1	ActiveIntronRegion	0	23.26	24.18	6.99	26.66	9.46	36.65	5.01
82	E7_Aa	NovelBoundary	0	19.88	26.19	6.08	23.52	3.23	46.26	6.89
83	ER7a	ExonRegion	1	22.34	37.96	13.12	70.27	12.93	106.42	5.02
84	E7_Ab	KnownBoundary	0	37.35	61.29	54.13	122.97	43.32	115.29	25.91
85	ER7b	ExonRegion	1	174.11	479.41	462.66	1131.75	397.01	726.34	265.52
86	E7a_E8a	KnownJunction	1	111.15	638.74	250.47	1578.44	76.10	1031.63	189.65
87	E7a_E9a	NovelJunction	1	1.69	28.71	10.27	108.42	1.18	105.51	2.42
88	ER8a	ExonRegion	1	291.88	766.10	884.51	1991.06	185.12	1437.88	454.94
89	E8a_E9a	KnownJunction	1	379.88	569.28	1307.93	1390.97	311.56	1150.09	541.53
90	ER9a	ExonRegion	1	276.03	619.67	1040.84	1411.42	751.68	1183.65	473.50
91	E9a_E10a	KnownJunction	1	81.68	519.49	333.84	1158.90	1062.81	939.44	261.95
92	ER10a	ExonRegion	1	59.32	331.84	242.16	685.07	237.07	655.11	126.28
93	E10_Da	KnownBoundary	1	5.29	7.51	29.88	31.91	28.98	19.67	8.90
94	E10_Db	KnownBoundary	0	4.96	12.24	7.85	13.33	3.34	13.78	6.66
95	ER10b	ExonRegion	1	7.97	14.58	25.57	37.25	26.02	28.04	14.00
96	ER10c	ExonRegion	0	4.38	13.38	11.16	15.62	4.54	18.63	6.73