Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MAPKBP1	Gene	0	67.33	287.08	277.44	520.25	25.69	43.48	94.95
2	397324	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	260357	Transcript	0	0	0	0	0	0	0	0
4	389931	Transcript	0	0.00	0.94	0.00	0.87	0.00	0.00	0.00
5	IG5	Intergenic	0	9.35	4.27	34.05	9.18	3.45	6.23	11.60
6	IG5_AR1	ActiveIntergenicRegion	0	10.88	3.76	35.70	9.69	5.42	7.18	10.02
7	IG5_SR1	SilentIntergenicRegion	0	11.59	5.78	41.68	11.75	3.76	6.67	13.96
8	IG5_AR2	ActiveIntergenicRegion	0	8.65	6.12	29.25	9.40	6.25	9.51	14.15
9	IG5_SR2	SilentIntergenicRegion	0	6.94	3.18	31.10	6.90	2.13	5.95	11.75
10	IG5_AR3	ActiveIntergenicRegion	0	7.15	3.94	19.40	5.82	0.66	3.86	9.84
11	IG5_SR3	SilentIntergenicRegion	0	3.43	1.98	11.42	6.38	0.56	2.59	2.51
12	ER1a	ExonRegion	1	9.98	68.00	34.60	140.96	3.66	22.03	20.30
13	E1a_E2a	KnownJunction	0	4.44	52.28	21.27	87.59	2.03	10.51	6.00
14	E2_Aa	NovelBoundary	0	17.96	86.07	78.06	105.74	7.24	10.83	32.72
15	ER2a	ExonRegion	0	49.44	243.80	184.39	426.10	11.98	49.86	69.63
16	E2_Da	NovelBoundary	0	22.43	13.77	100.10	25.01	0.00	6.70	14.33
17	E2a_E3a	KnownJunction	0	47.43	317.70	174.31	539.74	16.21	53.09	67.42
18	E2a_E4a	NovelJunction	1	0.60	28.27	2.43	14.39	0.00	0.00	1.95
19	I2	Intron	0	28.39	10.32	65.87	19.18	3.68	4.72	12.90
20	I2_SR1	SilentIntronRegion	0	30.00	10.36	77.60	21.15	4.90	4.42	15.20
21	I2_AR1	ActiveIntronRegion	0	23.79	6.83	58.97	10.86	4.00	1.56	8.75
22	I2_SR2	SilentIntronRegion	1	53.20	13.86	98.74	25.95	6.53	9.27	17.58
23	I2_AR2	ActiveIntronRegion	0	55.12	13.52	104.22	28.03	6.64	5.07	19.27
24	I2_AR3	ActiveIntronRegion	0	28.96	11.72	54.07	21.85	5.05	7.13	15.75
25	I2_SR4	SilentIntronRegion	0	24.37	8.61	58.55	13.55	2.69	3.92	9.05
26	I2_AR4	ActiveIntronRegion	0	18.47	4.67	56.56	12.00	2.26	1.98	8.70
27	I2_SR5	SilentIntronRegion	0	27.73	11.44	63.41	23.34	2.37	6.49	11.67
28	I2_AR5	ActiveIntronRegion	1	28.55	14.93	71.34	23.64	4.38	9.62	15.60
29	I2_SR6	SilentIntronRegion	0	24.93	9.96	61.69	19.51	2.81	4.47	11.27
30	I2_AR6	ActiveIntronRegion	0	28.37	12.94	72.55	22.27	2.97	5.60	14.81
31	I2_SR7	SilentIntronRegion	0	19.10	7.35	49.29	15.52	1.70	2.38	9.58
32	I2_AR8	ActiveIntronRegion	0	22.25	12.15	56.63	21.50	2.61	2.78	12.40
33	I2_SR8	SilentIntronRegion	0	61.87	21.42	114.38	27.78	6.03	6.12	22.32
34	I2_AR9	ActiveIntronRegion	0	34.17	16.04	89.02	32.36	3.75	4.96	18.09
35	I2_SR9	SilentIntronRegion	0	26.26	11.81	67.33	15.86	3.18	3.49	15.27
36	E3_Aa	NovelBoundary	0	35.47	12.56	72.89	23.19	0.00	7.08	19.33
37	ER3a	ExonRegion	0	66.52	372.46	248.08	535.03	19.56	58.33	87.95
38	E3_Da	NovelBoundary	0	34.01	25.82	109.73	35.41	5.53	11.58	26.70
39	E3a_E4a	KnownJunction	0	53.62	397.25	250.52	587.42	22.08	64.96	92.32
40	I3	Intron	0	16.29	11.53	46.89	20.82	1.95	3.87	9.29
41	I3_AR1	ActiveIntronRegion	0	35.32	15.05	99.63	28.86	4.72	7.10	21.31
42	I3_SR1	SilentIntronRegion	0	18.81	8.16	50.45	13.39	2.55	2.46	6.84
43	I3_AR2	ActiveIntronRegion	0	21.80	29.33	78.48	38.72	2.89	7.68	17.50
44	ER4a	ExonRegion	0	51.88	378.86	268.35	563.43	24.86	54.70	105.34
45	E4a_E5a	KnownJunction	0	43.98	319.67	255.09	468.41	29.95	47.46	101.17
46	ER5a	ExonRegion	0	49.70	294.56	204.15	467.40	20.80	37.33	94.28
47	E5a_E6a	KnownJunction	0	38.62	279.00	142.05	440.12	16.57	31.01	73.00
48	ER6a	ExonRegion	0	48.72	303.68	196.01	493.07	21.44	40.01	86.99
49	E6a_E7a	KnownJunction	0	75.96	291.85	264.74	457.89	22.36	40.63	83.58
50	E6a_E8a	NovelJunction	1	0.00	32.92	3.12	32.70	1.84	8.68	8.11
51	I6	Intron	0	15.90	16.88	58.96	30.24	1.06	3.36	9.49
52	I6_SR1	SilentIntronRegion	0	15.98	16.96	59.26	30.39	1.07	3.38	9.54
53	E7_Aa	NovelBoundary	1	23.28	23.17	57.42	30.07	0.85	3.32	7.64
54	ER7a	ExonRegion	0	85.83	323.17	327.38	547.83	26.44	39.84	106.01
55	E7_Da	NovelBoundary	1	40.56	57.93	160.95	64.37	3.27	6.83	10.53
56	E7a_E8a	KnownJunction	0	76.32	256.38	298.03	483.25	41.79	21.79	94.21
57	ER8a	ExonRegion	0	89.68	352.80	353.52	555.50	29.12	38.33	111.51
58	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	E8a_E10a	KnownJunction	0	48.42	305.33	241.35	517.44	24.85	21.15	86.59
60	E8a_E11a	NovelJunction	1	0.00	1.02	0.76	15.04	0.00	0.00	0.00
61	E8a_E15a	NovelJunction	1	0.83	3.26	4.12	18.26	0.00	5.84	0.67
62	E9a_E10a	KnownJunction	0	0.00	1.60	0.00	1.35	0.00	0.00	0.00
63	ER9a	ExonRegion	0	0.00	1.21	0.00	1.25	0.00	0.00	0.00
64	ER10a	ExonRegion	0	75.21	347.11	306.30	549.22	28.58	33.64	102.35
65	E10a_E11a	KnownJunction	0	50.59	291.38	232.73	535.16	28.61	39.29	83.42
66	ER11a	ExonRegion	0	55.43	314.89	261.93	537.87	22.11	36.59	86.76
67	E11a_E12a	KnownJunction	0	47.17	323.09	237.48	559.95	18.07	45.88	84.54
68	E11a_E13a	NovelJunction	1	1.03	10.53	23.67	27.77	0.00	6.83	8.91
69	ER12a	ExonRegion	0	51.30	251.10	212.99	409.77	21.14	35.98	67.82
70	E12a_E13a	KnownJunction	0	38.67	233.05	171.70	336.55	14.55	27.95	60.45
71	ER13a	ExonRegion	0	42.86	271.34	201.04	400.44	16.32	26.90	77.78
72	E13a_E14a	KnownJunction	0	36.87	303.44	178.65	403.33	14.78	36.72	76.19
73	ER14a	ExonRegion	0	43.07	291.92	207.61	468.74	18.74	34.41	90.29
74	E14a_E15a	KnownJunction	0	43.84	261.69	210.88	470.95	17.43	24.20	86.62
75	ER15a	ExonRegion	0	37.62	272.20	182.42	472.07	19.30	34.46	75.27
76	E15a_E16a	KnownJunction	1	50.45	296.74	170.43	506.03	8.25	20.18	69.36
77	ER16a	ExonRegion	0	50.79	289.72	209.23	500.56	19.05	27.78	85.52
78	E16a_E17a	KnownJunction	0	53.27	295.29	241.95	505.03	26.70	34.79	96.78
79	E16a_E18a	NovelJunction	1	3.77	29.48	20.88	91.73	0.88	10.77	13.29
80	ER17a	ExonRegion	0	59.01	334.03	278.65	549.83	26.89	30.32	106.85
81	E17a_E18a	KnownJunction	0	63.30	331.73	281.10	530.85	39.17	28.14	111.14
82	ER18a	ExonRegion	0	82.42	393.93	364.25	650.16	34.96	42.59	126.93
83	E18a_E19a	KnownJunction	0	90.16	400.17	374.71	739.64	40.37	58.83	109.43
84	ER19a	ExonRegion	0	98.39	368.25	424.83	681.21	37.81	52.24	124.87
85	E19a_E20a	KnownJunction	0	89.74	348.86	419.67	653.79	32.94	58.45	117.32
86	ER20a	ExonRegion	0	71.31	304.19	348.89	552.31	35.73	45.15	106.56
87	E20a_E21a	KnownJunction	0	55.36	255.70	255.82	490.57	26.99	29.02	92.57
88	ER21a	ExonRegion	0	54.72	283.38	256.88	492.18	24.81	49.32	90.75
89	E21a_E22a	KnownJunction	0	44.75	291.67	198.30	486.66	13.97	27.01	72.23
90	ER22a	ExonRegion	0	40.04	286.87	197.87	453.59	17.89	30.71	73.71
91	E22a_E23a	KnownJunction	0	32.98	237.99	172.44	426.20	17.27	28.70	65.52
92	ER23a	ExonRegion	0	34.20	245.84	160.44	450.93	21.52	22.77	62.51
93	E23a_E24a	KnownJunction	0	39.97	255.67	157.38	434.79	20.98	20.69	63.32
94	ER24a	ExonRegion	0	61.18	325.70	280.84	550.35	20.51	43.91	98.53
95	E24a_E25a	KnownJunction	0	83.65	412.91	359.33	745.01	17.54	57.99	136.48
96	E25_Aa	NovelBoundary	1	38.12	4.12	157.44	12.65	0.99	1.31	11.32
97	ER25a	ExonRegion	0	80.50	391.85	388.86	692.92	28.34	71.57	103.99
98	E25a_E26a	KnownJunction	0	47.62	306.61	243.86	563.60	26.88	52.77	78.41
99	ER26a	ExonRegion	0	57.73	344.20	284.30	585.30	16.93	49.69	92.53
100	E26a_E27a	KnownJunction	0	44.56	312.84	248.99	486.61	19.23	50.12	93.35
101	ER27a	ExonRegion	0	50.90	308.81	262.34	509.24	19.77	47.19	90.07
102	E27a_E28a	KnownJunction	0	51.00	220.36	218.90	407.94	11.80	39.93	76.43
103	E27a_E29a	NovelJunction	0	0.00	7.99	0.00	15.12	0.00	4.34	0.89
104	I27	Intron	0	16.88	20.02	46.05	25.01	1.70	2.19	5.40
105	I27_AR1	ActiveIntronRegion	0	17.07	20.25	46.55	25.29	1.72	2.22	5.46
106	E28_Aa	NovelBoundary	0	22.71	26.82	55.04	35.46	0.00	4.23	11.98
107	ER28a	ExonRegion	0	62.86	302.50	281.25	516.99	12.99	39.94	103.46
108	E28_Da	NovelBoundary	1	28.49	24.48	76.32	23.84	3.32	4.15	3.40
109	E28a_E29a	KnownJunction	0	37.87	281.26	208.13	443.94	8.37	36.50	88.70
110	ER29a	ExonRegion	0	44.93	289.40	223.81	500.84	7.79	47.18	75.93
111	E29_Da	KnownBoundary	0	58.46	314.23	282.94	580.35	9.61	57.30	88.53
112	E29a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
113	ER29b	ExonRegion	0	64.91	288.60	288.36	565.03	21.94	43.86	112.56
114	E29b_E30a	KnownJunction	0	92.26	316.52	377.55	603.62	27.50	54.35	129.04
115	ER30a	ExonRegion	0	60.74	275.39	264.92	507.09	21.40	47.87	97.37
116	E30a_E31a	KnownJunction	0	43.46	212.06	161.12	409.78	18.58	40.01	53.81
117	E31_Aa	NovelBoundary	1	28.81	9.62	72.76	15.33	2.35	3.32	2.75
118	ER31a	ExonRegion	0	49.39	215.34	172.46	383.90	20.48	27.84	74.25
119	E31a_E32a	KnownJunction	0	47.00	202.92	200.98	374.21	16.07	29.56	89.86
120	ER32a	ExonRegion	0	88.48	263.50	325.81	553.60	35.78	47.21	104.14
121	IG6	Intergenic	0	22.53	85.40	73.22	191.96	5.04	25.10	24.03
122	IG6_AR1	ActiveIntergenicRegion	0	22.71	86.09	73.81	193.51	5.08	25.30	24.23