Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ELL3	Gene	0	34.64	42.80	13.60	37.50	30.18	46.73	14.02
2	319359	Transcript	0	31.66	42.24	6.48	15.86	34.23	18.54	6.75
3	ER1a	ExonRegion	0	3.84	6.15	1.55	7.43	2.02	13.59	1.05
4	E1_Da	NovelBoundary	0	4.71	16.21	0.00	7.48	1.78	19.59	2.68
5	E1a_E2a	KnownJunction	0	8.76	21.94	1.14	9.40	8.32	16.62	5.52
6	I1	Intron	1	1.90	4.49	0.99	17.20	1.27	23.52	0.91
7	I1_AR1	ActiveIntronRegion	1	1.92	4.53	1.00	17.34	1.28	23.70	0.92
8	E2_Aa	NovelBoundary	1	3.62	9.93	0.63	23.76	0.97	49.15	0.00
9	ER2a	ExonRegion	1	14.79	20.79	2.11	2.60	17.16	4.70	3.04
10	E2_Da	NovelBoundary	1	2.37	12.37	2.39	15.98	1.18	32.03	1.55
11	E2a_E3a	KnownJunction	1	18.16	14.79	2.34	4.04	22.82	5.39	1.61
12	I2	Intron	1	3.37	10.06	2.82	29.62	0.58	46.58	2.15
13	I2_AR1	ActiveIntronRegion	1	3.39	10.12	2.83	29.79	0.58	46.82	2.16
14	E3_Aa	NovelBoundary	1	10.97	32.26	6.50	36.17	0.00	92.41	9.85
15	ER3a	ExonRegion	1	17.05	30.65	5.19	17.72	26.75	33.82	1.94
16	E3_Da	NovelBoundary	1	2.62	13.79	4.64	30.21	2.03	65.12	5.92
17	E3a_E4a	KnownJunction	1	9.21	23.09	3.85	2.84	24.44	1.23	1.61
18	I3	Intron	1	3.37	4.01	3.87	17.15	1.05	33.48	4.40
19	I3_SR1	SilentIntronRegion	1	3.43	4.09	3.94	17.41	1.05	33.99	4.47
20	E4_Aa	NovelBoundary	1	5.06	11.19	3.03	36.14	0.00	52.13	7.85
21	ER4a	ExonRegion	0	25.47	53.20	9.39	30.37	28.75	52.85	12.30
22	E4_Da	NovelBoundary	1	14.40	16.16	7.34	35.19	3.25	74.66	8.07
23	E4a_E5a	KnownJunction	1	28.24	50.55	2.11	6.96	29.32	13.00	3.47
24	I4	Intron	1	5.22	11.60	6.88	21.27	1.49	28.46	7.34
25	I4_SR1	SilentIntronRegion	1	5.58	12.57	7.40	23.06	1.60	30.18	7.76
26	E5_Aa	NovelBoundary	1	9.78	24.59	5.85	30.75	0.00	66.25	5.09
27	ER5a	ExonRegion	1	35.19	54.51	5.87	10.29	40.94	11.58	6.99
28	E5_Da	NovelBoundary	0	19.53	29.63	12.17	40.18	1.96	61.85	7.19
29	E5a_E6a	KnownJunction	1	32.01	55.85	3.25	7.48	49.19	0.00	6.78
30	I5	Intron	1	7.43	11.56	5.88	23.12	2.89	31.65	6.75
31	I5_AR1	ActiveIntronRegion	1	5.14	5.85	4.45	13.33	1.72	23.33	5.25
32	I5_SR1	SilentIntronRegion	1	8.27	13.54	6.47	26.60	3.31	34.83	7.35
33	E6_Aa	NovelBoundary	1	9.00	15.63	11.44	41.53	2.35	55.10	5.26
34	ER6a	ExonRegion	1	28.86	54.24	8.86	15.09	44.36	13.11	6.16
35	E6_Da	NovelBoundary	1	3.87	9.88	8.82	20.21	2.17	40.28	7.60
36	E6a_E7a	KnownJunction	1	24.85	48.13	5.99	9.08	45.55	6.06	2.16
37	E7_Aa	NovelBoundary	1	4.17	21.75	2.77	41.72	5.56	38.94	14.36
38	ER7a	ExonRegion	1	49.15	64.18	14.69	29.63	43.87	37.04	7.99
39	E7_Da	NovelBoundary	1	15.76	16.89	13.44	33.38	0.00	52.15	5.89
40	E7a_E8a	KnownJunction	1	31.24	51.86	5.78	7.78	38.68	3.19	5.76
41	E8_Aa	NovelBoundary	1	17.94	12.35	19.39	29.23	2.35	61.75	7.34
42	ER8a	ExonRegion	1	38.24	54.22	5.47	9.83	39.34	5.30	5.76
43	E8_Da	NovelBoundary	1	12.13	8.14	8.48	25.52	3.00	40.82	4.50
44	E8a_E9a	KnownJunction	1	33.01	48.05	4.60	8.05	44.61	7.34	5.09
45	I8	Intron	1	5.69	6.80	4.49	13.87	2.37	22.83	4.59
46	I8_AR1	ActiveIntronRegion	1	5.76	6.90	4.56	14.06	2.41	23.16	4.65
47	E9_Aa	NovelBoundary	1	7.38	13.11	12.60	30.88	0.00	62.39	6.52
48	ER9a	ExonRegion	0	47.91	58.93	9.38	32.94	42.58	41.25	10.25
49	E9_Da	NovelBoundary	1	5.22	18.00	7.77	20.24	6.69	62.07	6.64
50	E9a_E10a	KnownJunction	1	32.19	33.15	2.39	8.21	34.19	2.76	5.93
51	I9_AR1	ActiveIntronRegion	1	4.74	8.74	3.68	18.14	3.20	25.07	2.76
52	E10_Aa	NovelBoundary	0	3.14	12.45	6.73	15.44	4.29	26.21	3.10
53	ER10a	ExonRegion	1	53.02	35.10	2.89	9.03	38.21	4.58	5.52
54	E10_Da	NovelBoundary	1	11.07	5.49	9.92	11.59	6.87	18.38	1.52
55	E10a_E11a	KnownJunction	1	61.39	32.29	2.86	6.20	41.98	4.74	2.94
56	I10	Intron	0	2.49	1.20	0.64	0.00	8.96	1.15	0.63
57	I10_AR1	ActiveIntronRegion	0	2.97	1.21	0.68	0.00	12.52	1.18	0.67
58	E11_Aa	NovelBoundary	1	30.76	30.76	16.94	64.56	10.03	67.29	15.23
59	ER11a	ExonRegion	0	72.23	75.29	36.43	98.01	55.79	111.18	39.92