Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 CASC5 Gene 0 3.02 0.86 1.36 0.17 55.65 0.27 5.81 2 260369 Transcript 0 0.00 0.00 0.00 0.00 0.54 0.00 0.35 3 399668 Transcript 0 0 0 0 0 0 0 0 4 346991 Transcript 0 0.00 0.00 0.00 0.00 1.80 0.00 0.78 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 1.08 0.00 0.69 6 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.68 7 ER1b ExonRegion 0 0.00 1.38 0.34 0.00 5.02 0.00 0.36 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 1.18 0.00 1.23 9 ER2a ExonRegion 0 0.43 1.21 0.00 0.00 3.55 0.00 1.97 10 E2a_E3a KnownJunction 0 1.00 1.18 0.00 0.00 2.35 0.00 2.41 11 ER3a ExonRegion 0 0.77 1.28 0.46 0.00 4.54 0.00 3.61 12 E3a_E4a KnownJunction 0 0.00 1.55 0.83 0.00 8.51 0.00 2.32 13 ER4a ExonRegion 0 1.00 0.97 0.84 0.00 13.52 0.00 2.91 14 E4a_E5a KnownJunction 0 2.70 0.00 0.80 0.00 23.24 0.00 2.49 15 ER5a ExonRegion 0 2.13 0.88 0.81 0.00 18.85 0.00 3.58 16 E5a_E6a KnownJunction 0 1.03 1.63 0.73 0.00 21.09 0.00 4.51 17 ER6a ExonRegion 0 1.96 1.58 1.14 0.00 17.89 0.00 4.42 18 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 2.28 0.00 0.00 19 E6a_E8a KnownJunction 0 2.87 1.63 0.78 0.00 22.55 0.00 1.68 20 E7_Aa NovelBoundary 0 7.63 4.02 4.91 2.49 6.32 3.03 9.70 21 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 3.13 0.00 0.78 22 E7_Da NovelBoundary 0 1008.52 704.15 626.37 461.06 382.86 457.42 310.92 23 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.58 24 ER8a ExonRegion 0 1.72 1.21 1.75 0.37 28.77 0.00 5.54 25 E8a_E9a KnownJunction 0 0.90 0.00 1.62 0.00 28.10 0.00 2.57 26 ER9a ExonRegion 0 1.15 0.80 0.96 1.25 35.23 0.00 6.28 27 E9a_E10a KnownJunction 0 0.83 1.37 0.00 1.60 44.52 0.00 4.97 28 ER10a ExonRegion 0 5.16 2.06 0.28 0.66 40.74 0.00 5.15 29 E10a_E11a KnownJunction 0 5.87 1.63 0.68 1.03 32.20 0.00 4.49 30 ER11a ExonRegion 0 3.55 0.82 1.62 0.22 55.59 0.25 6.06 31 E11_Da KnownBoundary 0 5.74 1.18 3.64 0.00 83.59 0.00 8.01 32 E11a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER11b ExonRegion 0 4.35 1.00 2.13 0.00 84.17 0.00 5.23 34 E11_Ab KnownBoundary 0 3.99 0.00 0.00 0.00 82.46 0.00 4.18 35 ER11c ExonRegion 0 6.32 0.50 0.00 0.00 73.50 0.00 8.74 36 E11_Db KnownBoundary 0 6.29 1.26 0.00 0.00 74.92 0.00 8.10 37 ER11d ExonRegion 0 6.08 1.21 1.03 0.00 75.55 0.42 8.62 38 E11c_E12a KnownJunction 0 2.39 0.00 2.51 0.00 68.56 1.37 6.31 39 ER12a ExonRegion 0 5.31 0.52 1.98 0.00 87.09 0.85 8.78 40 E12a_E13a KnownJunction 0 3.74 1.26 1.58 0.00 71.14 1.66 8.20 41 ER13a ExonRegion 0 1.47 0.30 2.16 0.00 48.10 0.65 7.02 42 E13a_E14a KnownJunction 0 0.00 0.00 2.37 0.00 23.86 0.00 4.82 43 ER14a ExonRegion 0 3.84 0.61 2.49 0.00 70.32 0.79 9.95 44 E14a_E15a KnownJunction 0 4.52 1.50 3.49 0.00 98.23 1.15 12.63 45 ER15a ExonRegion 0 3.89 0.72 2.37 0.00 58.62 0.93 7.40 46 E15a_E16a KnownJunction 0 1.50 1.63 1.44 0.00 49.96 0.00 7.31 47 ER16a ExonRegion 0 0.96 0.44 2.36 0.00 50.43 0.00 4.48 48 E16a_E17a KnownJunction 0 2.72 0.00 2.90 0.00 51.80 0.00 2.19 49 ER17a ExonRegion 0 2.12 1.71 1.68 0.00 64.57 0.61 5.93 50 E17a_E18a KnownJunction 0 1.00 1.16 2.16 0.00 48.83 1.31 6.61 51 ER18a ExonRegion 0 2.18 0.87 1.46 0.00 63.09 0.50 5.26 52 E18a_E19a KnownJunction 0 1.54 0.00 0.00 0.00 72.52 1.31 6.28 53 ER19a ExonRegion 0 2.24 0.00 0.96 0.00 89.26 0.91 6.62 54 E19a_E20a KnownJunction 0 2.42 0.00 1.44 0.00 81.75 0.00 5.62 55 ER20a ExonRegion 0 1.77 0.00 0.71 0.00 79.73 0.00 5.16 56 E20a_E21a KnownJunction 0 1.70 0.00 0.00 0.00 82.30 0.00 2.84 57 ER21a ExonRegion 0 1.83 0.00 0.50 0.00 80.26 0.00 7.47 58 E21a_E22a KnownJunction 0 2.02 0.00 0.00 0.00 96.52 0.00 8.40 59 ER22a ExonRegion 0 1.68 0.00 0.00 0.00 87.70 0.00 7.81 60 E22a_E23a KnownJunction 0 0.90 0.00 0.00 0.00 93.43 0.00 8.51 61 ER23a ExonRegion 0 1.75 0.70 0.00 0.00 76.72 0.00 10.98 62 E23a_E24a KnownJunction 0 3.42 2.68 0.00 0.00 84.24 0.00 13.34 63 ER24a ExonRegion 0 2.46 2.89 0.00 0.00 93.41 0.00 9.12 64 E24a_E25a KnownJunction 0 0.00 3.76 0.00 0.00 92.72 0.00 7.28 65 ER25a ExonRegion 0 3.91 1.44 0.36 0.80 88.74 0.00 6.79 66 E25a_E26a KnownJunction 0 2.69 1.13 2.13 0.00 133.11 0.00 6.52 67 ER26a ExonRegion 0 2.67 0.87 0.91 0.00 98.07 0.00 7.05 68 E26a_E27a KnownJunction 0 1.92 0.00 0.00 0.00 79.72 0.00 4.99 69 ER27a ExonRegion 0 1.80 1.36 1.01 0.16 60.88 0.61 4.66 70 IG30_AR1 ActiveIntergenicRegion 0 2.70 1.12 0.89 0.19 57.66 0.57 4.90 71 IG30_AR2 ActiveIntergenicRegion 0 16.37 3.30 12.74 2.17 15.46 1.15 10.42 72 IG30_SR4 SilentIntergenicRegion 0 5.05 1.21 3.73 1.83 10.24 0.00 1.81 73 IG30_AR3 ActiveIntergenicRegion 0 26.68 2.31 20.22 3.85 37.85 2.26 13.92 74 IG30_SR5 SilentIntergenicRegion 0 15.42 2.59 12.89 3.27 23.67 2.27 7.77 75 IG30_SR6 SilentIntergenicRegion 0 14.61 4.63 9.68 2.07 18.46 1.47 7.55 76 IG30_AR5 ActiveIntergenicRegion 0 17.77 7.06 10.22 6.08 17.78 2.60 8.51