Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C15orf29	Gene	0	73.82	88.24	105.71	48.24	102.65	67.90	91.21
2	256544	Transcript	0	98.43	125.66	143.48	72.66	151.28	95.69	120.96
3	ER1a	ExonRegion	1	38.70	24.04	28.91	19.03	15.71	20.65	16.51
4	E1a_E2a	KnownJunction	1	33.23	30.26	22.62	21.37	19.16	22.81	15.01
5	ER2a	ExonRegion	0	132.32	117.50	145.97	75.48	96.76	92.96	96.97
6	E2a_E3a	KnownJunction	0	123.05	139.58	150.41	84.25	289.98	84.63	99.62
7	ER3a	ExonRegion	0	138.39	168.63	191.32	99.73	188.22	115.36	122.30
8	E3a_E4a	KnownJunction	0	121.52	160.52	171.98	86.85	132.37	115.75	104.18
9	ER4a	ExonRegion	0	107.00	171.49	179.82	74.74	145.43	112.75	135.30
10	E4a_E5a	KnownJunction	0	79.79	170.08	155.08	72.33	151.16	90.99	120.77
11	ER5a	ExonRegion	0	93.15	195.57	160.68	85.03	184.08	107.85	154.29
12	E5a_E6a	KnownJunction	0	83.75	126.44	148.75	64.96	181.54	89.62	114.21
13	E5a_E9a	NovelJunction	0	3.49	14.95	3.05	5.36	3.46	2.60	2.45
14	ER6a	ExonRegion	0	87.54	155.05	144.81	80.03	180.06	108.71	147.91
15	E6a_E7a	KnownJunction	0	71.10	143.57	116.34	80.87	138.48	107.92	139.99
16	E7_Aa	NovelBoundary	1	20.14	8.83	20.82	0.00	15.65	1.26	5.47
17	ER7a	ExonRegion	0	95.86	122.78	151.09	87.25	167.92	116.99	160.29
18	E7_Da	NovelBoundary	1	15.34	24.35	20.55	3.82	21.72	3.11	9.43
19	E7a_E8a	KnownJunction	0	91.18	89.43	147.91	99.88	170.87	130.54	134.60
20	I7	Intron	1	13.48	20.59	21.78	3.50	24.19	5.84	8.06
21	I7_AR1	ActiveIntronRegion	1	13.55	20.70	21.89	3.51	24.30	5.87	8.10
22	E8_Aa	NovelBoundary	1	26.95	21.38	31.40	8.07	48.62	3.99	9.33
23	ER8a	ExonRegion	0	114.13	118.10	165.17	92.84	201.37	114.75	174.18
24	E8_Da	NovelBoundary	0	21.20	18.34	21.31	4.17	32.57	1.07	7.85
25	E8a_E9a	KnownJunction	0	116.01	99.23	164.87	73.20	179.93	105.78	142.05
26	I8	Intron	0	21.03	12.55	21.61	2.15	30.74	5.33	7.47
27	I8_AR1	ActiveIntronRegion	0	21.08	12.58	21.65	2.15	30.81	5.34	7.48
28	ER9a	ExonRegion	0	152.79	145.76	209.17	82.26	222.01	119.72	176.56
29	E9a_E10a	KnownJunction	0	136.42	152.56	195.94	68.59	135.02	112.83	176.59
30	E10_Aa	NovelBoundary	1	74.52	19.91	102.59	7.07	10.35	20.77	31.08
31	ER10a	ExonRegion	0	54.31	56.90	75.25	31.91	74.32	47.43	66.99
32	IG31	Intergenic	0	1.82	2.81	2.31	1.34	2.60	1.06	10.08
33	IG31_SR6	SilentIntergenicRegion	0	4.40	4.30	5.34	2.31	9.56	2.69	16.54
34	IG31_SR5	SilentIntergenicRegion	0	1.17	2.54	2.42	0.88	2.54	0.63	9.61
35	IG31_AR5	ActiveIntergenicRegion	0	1.28	3.95	3.13	1.07	4.05	1.39	15.60
36	IG31_AR4	ActiveIntergenicRegion	0	2.78	4.54	3.98	1.94	5.30	1.48	16.90
37	IG31_AR3	ActiveIntergenicRegion	0	2.36	2.94	2.87	1.61	1.97	1.26	10.58
38	IG31_SR2	SilentIntergenicRegion	0	0.83	2.19	0.81	0.83	0.25	0.55	7.72
39	IG31_AR2	ActiveIntergenicRegion	0	7.68	3.07	9.60	6.77	4.10	2.66	5.33
40	IG31_AR1	ActiveIntergenicRegion	0	5.99	5.76	7.68	4.96	5.84	3.63	10.69