Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	BRF1	Gene	0	17.52	37.11	24.84	29.64	20.33	25.73	31.43
2	345053	Transcript	0	2.28	2.83	0.84	1.57	0.70	0.14	1.59
3	379932	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	332890	Transcript	0	0.00	0.00	1.52	0.00	0.00	0.00	0.00
5	379937	Transcript	0	0.00	4.83	0.60	2.84	1.18	1.66	2.02
6	327359	Transcript	0	0	0	0	0	0	0	0
7	392557	Transcript	0	3.30	1.47	2.32	1.10	5.65	1.09	3.41
8	ER1a	ExonRegion	0	2.96	17.55	3.25	11.59	1.87	7.58	5.77
9	E1a_E2a	KnownJunction	0	12.38	53.88	15.63	37.68	10.90	24.04	25.80
10	E1a_E3a	KnownJunction	0	0.00	4.83	0.60	2.84	1.18	1.66	2.02
11	ER2a	ExonRegion	0	17.69	56.42	24.12	31.71	16.81	27.80	37.54
12	E2a_E3a	KnownJunction	0	22.21	49.57	35.15	30.64	23.61	20.66	53.46
13	ER3a	ExonRegion	0	24.42	60.88	39.12	44.95	32.92	29.12	53.49
14	E3a_E4a	KnownJunction	0	17.11	50.65	36.01	36.25	29.21	23.45	48.27
15	ER4a	ExonRegion	0	32.13	71.07	55.88	45.94	31.74	28.01	59.85
16	E4_Da	KnownBoundary	0	2.40	3.76	6.31	5.82	3.43	0.00	3.34
17	E4a_E7a	KnownJunction	0	34.01	56.35	49.64	34.27	25.75	26.32	45.12
18	ER4b	ExonRegion	0	3.21	2.02	1.99	3.62	1.28	0.00	3.30
19	E4b_E5a	KnownJunction	0	3.54	4.18	0.63	0.00	0.00	0.00	2.49
20	ER5a	ExonRegion	0	3.21	3.64	1.56	2.82	2.22	0.72	2.16
21	E5a_E6a	KnownJunction	0	0.90	3.15	0.00	1.44	0.00	0.00	0.00
22	ER6a	ExonRegion	0	0.54	1.14	0.00	0.00	0.00	0.00	0.00
23	E7_Aa	NovelBoundary	0	9.76	6.94	7.33	4.31	1.01	1.66	3.31
24	ER7a	ExonRegion	0	34.31	64.12	43.83	49.26	33.79	36.83	55.17
25	E7_Da	NovelBoundary	0	8.80	10.19	6.41	6.29	2.14	1.39	3.02
26	E7a_E9a	KnownJunction	0	27.30	51.54	33.96	37.06	27.78	34.33	49.29
27	E7a_E10a	NovelJunction	0	4.12	17.52	8.62	10.67	6.22	15.70	13.70
28	ER8a	ExonRegion	0	5.27	2.94	4.64	2.21	7.93	2.17	5.26
29	E8_Da	NovelBoundary	0	9.53	3.26	6.90	3.22	0.99	1.55	3.21
30	E8a_E9a	KnownJunction	0	1.34	0.00	0.00	0.00	3.37	0.00	1.56
31	ER9a	ExonRegion	0	24.42	52.36	37.48	35.66	24.68	27.14	53.31
32	E9a_E10a	KnownJunction	0	19.63	29.00	27.06	34.35	15.08	37.25	36.57
33	ER10a	ExonRegion	0	28.27	55.69	45.33	43.87	35.80	46.93	59.97
34	E10a_E11a	KnownJunction	0	25.77	64.79	56.00	33.24	55.42	40.07	79.38
35	ER11a	ExonRegion	0	29.32	60.83	52.51	50.00	36.12	39.00	59.40
36	E11_Da	KnownBoundary	0	22.75	57.51	44.17	40.26	22.06	43.74	41.05
37	E11a_E21c	KnownJunction	0	0.00	0.00	1.52	0.00	0.00	0.00	0.00
38	ER11b	ExonRegion	0	26.71	55.85	44.72	43.08	24.39	43.20	43.62
39	E11b_E12a	KnownJunction	0	21.56	43.37	37.77	32.21	30.34	37.47	39.12
40	ER12a	ExonRegion	0	28.80	61.65	54.26	48.41	29.98	39.91	54.74
41	E12a_E13a	KnownJunction	0	27.76	61.50	46.82	45.92	31.84	29.02	49.21
42	ER13a	ExonRegion	0	32.09	60.72	41.18	51.32	26.45	33.89	42.57
43	E13_Da	KnownBoundary	0	31.16	50.02	27.23	46.87	10.42	35.30	24.68
44	E13a_E21b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER13b	ExonRegion	0	25.79	48.42	30.70	49.99	18.67	31.98	30.63
46	E13b_E14a	KnownJunction	0	23.60	52.18	39.96	55.97	31.08	27.47	40.21
47	ER14a	ExonRegion	0	24.64	47.08	34.29	34.84	24.58	31.82	35.19
48	E14a_E15a	KnownJunction	0	39.49	53.88	38.60	33.11	35.41	31.65	47.68
49	ER15a	ExonRegion	0	29.85	63.25	41.19	42.18	31.96	36.92	52.17
50	E15a_E16a	KnownJunction	0	24.42	60.32	39.02	51.72	26.70	37.22	47.44
51	ER16a	ExonRegion	0	39.89	73.72	49.18	60.43	37.77	40.71	53.04
52	E16a_E17a	KnownJunction	0	52.47	80.68	61.29	58.95	55.74	47.27	63.14
53	ER17a	ExonRegion	0	60.60	80.05	66.77	66.27	59.57	56.48	76.24
54	E17a_E18a	KnownJunction	0	47.00	66.15	52.14	57.27	54.70	56.84	71.00
55	E18_Aa	NovelBoundary	1	10.82	0.00	13.08	0.00	0.00	0.00	0.00
56	ER18a	ExonRegion	0	32.66	52.23	47.01	53.27	45.01	35.76	47.99
57	E18a_E19a	KnownJunction	1	12.73	39.77	37.87	34.60	60.95	18.84	42.82
58	ER19a	ExonRegion	0	16.57	53.59	34.81	35.68	36.93	28.65	39.57
59	E19a_E20a	KnownJunction	0	16.06	61.55	27.10	30.42	27.76	31.22	41.50
60	ER20a	ExonRegion	0	16.62	59.99	26.05	36.97	28.74	36.49	39.70
61	E20a_E21a	KnownJunction	1	13.79	63.00	32.07	32.56	39.84	29.83	62.80
62	ER21a	ExonRegion	0	21.56	49.16	32.30	43.26	25.55	42.07	46.15
63	E21_Ab	KnownBoundary	0	18.46	24.06	23.88	15.98	17.75	21.04	22.21
64	E21_Ac	KnownBoundary	0	7.83	14.69	10.79	25.93	5.90	25.19	19.33
65	ER21b	ExonRegion	0	29.97	54.67	42.00	49.88	34.82	51.49	52.62
66	ER21c	ExonRegion	0	28.85	60.43	33.37	50.38	19.15	55.47	48.32
67	E21_Da	KnownBoundary	0	20.36	47.66	21.53	54.81	19.76	50.92	35.01
68	ER21d	ExonRegion	0	16.39	36.73	28.55	37.72	16.98	49.42	29.88
69	E21_Db	KnownBoundary	1	16.84	43.03	47.84	24.06	29.18	51.11	37.59
70	ER21e	ExonRegion	0	10.94	25.76	15.31	19.56	14.60	23.92	21.24
71	ER21f	ExonRegion	0	0.26	1.21	0.68	0.00	0.27	0.00	0.67