Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RAGE	Gene	0	67.41	53.64	31.96	66.16	3.10	38.24	15.65
2	361847	Transcript	0	0	0	0	0	0	0	0
3	193029	Transcript	0	4.68	11.82	2.60	12.30	0.99	2.90	3.02
4	392778	Transcript	0	0.11	0.00	0.58	0.18	0.00	0.53	0.00
5	392785	Transcript	0	12.01	3.28	6.59	6.35	0.15	4.00	1.09
6	ER1a	ExonRegion	0	14.39	29.09	9.65	48.46	1.03	24.30	9.12
7	E1a_E3a	KnownJunction	0	22.16	48.68	22.09	84.12	0.00	47.73	21.81
8	ER2a	ExonRegion	0	0.11	0.00	0.58	0.18	0.00	0.53	0.00
9	ER3a	ExonRegion	1	38.76	41.47	34.87	72.63	2.44	42.63	21.87
10	E3a_E4a	KnownJunction	0	16.67	18.55	14.89	25.28	3.53	17.21	10.91
11	E3a_E5a	NovelJunction	0	5.49	8.33	3.32	18.80	1.18	4.37	1.40
12	E3a_E6a	NovelJunction	0	13.69	12.14	9.18	22.70	0.00	21.71	3.55
13	E4_Aa	NovelBoundary	0	31.79	10.17	11.51	5.23	0.00	5.65	2.81
14	ER4a	ExonRegion	0	34.47	32.19	21.86	44.92	3.89	23.16	16.65
15	E4_Da	NovelBoundary	1	11.75	0.00	15.62	1.68	0.00	1.29	0.82
16	E4a_E5a	KnownJunction	0	58.53	53.09	27.02	52.34	4.40	32.91	17.58
17	I4_AR1	ActiveIntronRegion	0	12.38	3.96	11.89	5.34	0.66	2.82	2.06
18	I4_SR2	SilentIntronRegion	0	12.17	4.90	8.77	4.99	0.41	8.04	1.29
19	E5_Aa	NovelBoundary	1	10.50	0.00	11.90	2.74	0.00	0.00	0.82
20	ER5a	ExonRegion	0	68.06	51.83	42.44	81.14	4.12	39.15	17.14
21	E5a_E6a	KnownJunction	0	71.65	44.45	47.28	86.75	4.10	30.44	13.69
22	ER6a	ExonRegion	0	101.45	67.32	58.61	87.79	4.31	57.02	22.41
23	E6_Da	NovelBoundary	0	15.09	3.10	12.69	1.19	0.00	4.82	2.01
24	E6a_E7a	KnownJunction	0	108.05	82.65	54.51	96.12	3.11	75.31	26.66
25	E7_Aa	NovelBoundary	1	16.66	7.54	12.23	5.85	0.00	1.34	0.60
26	ER7a	ExonRegion	0	85.23	72.82	44.73	92.48	4.36	56.10	20.39
27	E7_Da	NovelBoundary	0	16.71	7.51	13.77	10.78	0.00	4.64	2.67
28	E7a_E8a	KnownJunction	0	55.79	54.99	29.16	69.84	6.78	42.32	15.31
29	I7	Intron	1	20.95	6.66	17.31	10.66	0.92	5.93	1.56
30	I7_AR1	ActiveIntronRegion	1	30.11	9.73	19.76	14.68	0.87	7.84	2.16
31	I7_SR1	SilentIntronRegion	1	15.06	4.69	15.81	8.08	0.96	4.72	1.18
32	E8_Aa	NovelBoundary	1	13.42	8.17	14.05	5.47	0.00	7.10	0.64
33	ER8a	ExonRegion	0	98.22	73.02	50.02	100.70	5.01	51.35	20.35
34	E8_Da	NovelBoundary	1	11.98	6.25	12.85	11.95	0.00	10.18	0.70
35	E8a_E10a	KnownJunction	0	87.36	70.75	52.06	93.74	1.18	47.57	23.39
36	E9_Aa	NovelBoundary	0	26.12	2.60	6.70	7.29	0.00	1.66	1.58
37	ER9a	ExonRegion	0	9.95	5.87	6.18	3.78	0.46	3.39	0.40
38	E9a_E10a	KnownJunction	0	21.58	1.63	12.14	9.73	0.00	6.35	2.65
39	E10_Aa	NovelBoundary	1	61.85	16.71	31.93	12.81	0.00	11.10	0.00
40	ER10a	ExonRegion	0	99.66	73.93	50.07	108.78	6.63	69.73	29.75
41	E10_Da	NovelBoundary	1	15.89	44.56	15.42	28.23	1.06	10.85	6.46
42	E10a_E11a	KnownJunction	0	46.01	41.69	29.52	64.96	0.00	54.86	17.24
43	E10a_E13a	NovelJunction	0	0.00	5.39	3.52	10.27	0.00	7.77	0.00
44	I10	Intron	0	33.80	34.10	19.39	28.28	1.76	16.56	12.56
45	I10_AR1	ActiveIntronRegion	0	33.88	34.19	19.44	28.35	1.77	16.60	12.60
46	E11_Aa	NovelBoundary	1	67.11	49.65	22.94	30.83	0.92	6.43	14.78
47	ER11a	ExonRegion	0	112.73	93.83	58.08	98.00	6.52	57.69	29.53
48	E11_Da	NovelBoundary	1	13.79	16.29	7.50	1.49	1.18	1.53	1.53
49	E11a_E12a	KnownJunction	0	26.57	29.92	12.55	33.21	0.00	11.63	9.29
50	E11a_E13a	NovelJunction	0	28.37	31.79	15.59	41.88	0.00	25.38	3.32
51	E11a_E16a	KnownJunction	0	4.16	9.33	0.57	10.76	1.18	1.61	3.81
52	I11	Intron	0	16.57	8.44	8.63	7.46	0.30	4.25	2.41
53	I11_AR1	ActiveIntronRegion	0	16.61	8.46	8.66	7.47	0.30	4.26	2.42
54	E12_Aa	NovelBoundary	0	11.27	11.03	7.29	8.21	0.00	17.96	1.42
55	ER12a	ExonRegion	1	29.02	35.38	17.95	44.54	2.00	18.07	14.14
56	E12_Da	NovelBoundary	0	14.02	20.02	7.04	12.68	0.00	19.30	2.29
57	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	I12	Intron	1	20.22	19.71	8.15	13.50	0.72	6.00	4.11
59	I12_AR1	ActiveIntronRegion	0	20.25	19.74	8.17	13.53	0.72	6.01	4.12
60	E13_Aa	NovelBoundary	0	20.13	15.84	13.05	7.75	1.13	7.40	2.11
61	ER13a	ExonRegion	0	78.20	71.54	36.80	85.33	4.59	56.69	20.93
62	E13_Da	NovelBoundary	0	62.35	33.47	25.09	37.11	0.00	32.75	9.57
63	E13a_E14a	KnownJunction	0	31.58	48.34	16.51	56.65	0.00	25.54	11.72
64	I13	Intron	1	6.45	11.18	1.11	6.26	0.91	2.07	2.82
65	I13_AR1	ActiveIntronRegion	0	6.58	11.39	1.12	6.36	0.92	2.12	2.87
66	E14_Aa	NovelBoundary	0	26.35	38.28	11.91	29.23	4.13	20.85	12.96
67	ER14a	ExonRegion	0	105.43	68.29	35.74	71.54	2.34	43.23	13.76
68	E14_Da	NovelBoundary	1	12.15	18.23	3.94	5.77	0.00	2.33	2.34
69	ER15a	ExonRegion	0	4.49	2.34	1.46	5.56	0.00	2.26	0.21
70	I15_SR1	SilentIntronRegion	0	3.47	10.83	1.62	9.69	0.20	5.25	0.51
71	E16_Aa	NovelBoundary	0	4.59	9.04	3.10	8.40	0.00	17.85	1.58
72	ER16a	ExonRegion	0	5.21	14.32	4.63	13.85	0.81	4.18	2.23
73	IG50	Intergenic	0	12.93	18.36	4.78	14.35	1.38	11.48	4.83
74	IG50_AR3	ActiveIntergenicRegion	0	14.79	27.32	4.81	21.10	2.08	15.92	7.19
75	IG50_SR3	SilentIntergenicRegion	0	5.72	8.18	6.15	2.07	0.55	2.13	1.29
76	IG50_AR2	ActiveIntergenicRegion	0	25.08	21.56	7.96	16.14	1.94	14.88	5.99