Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	COQ6	Gene	0	31.82	29.49	28.61	20.75	25.48	27.20	56.08
2	238709	Transcript	0	3.68	2.27	0.97	3.18	0.71	3.51	2.14
3	334571	Transcript	0	30.30	28.62	27.67	16.68	23.65	23.52	56.46
4	394026	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	1.98	2.32	1.44	2.57	0.25	2.38	1.31
6	E1a_E3a	KnownJunction	0	5.37	2.21	0.50	3.79	1.18	4.64	2.97
7	ER2a	ExonRegion	0	1.41	1.33	0.42	0.00	1.62	0.04	1.22
8	E2_Ab	KnownBoundary	0	5.61	6.17	6.77	1.57	3.41	2.52	5.20
9	ER2b	ExonRegion	0	6.55	11.59	4.84	7.16	2.76	7.42	11.50
10	E2a_E3a	KnownJunction	0	22.40	20.26	18.80	12.16	8.55	8.50	39.20
11	ER3a	ExonRegion	0	41.53	38.44	38.94	28.76	30.71	40.58	65.00
12	E3a_E4a	KnownJunction	0	34.97	39.35	32.41	20.81	23.12	25.73	60.98
13	E3a_E5a	KnownJunction	1	7.83	8.25	7.63	10.27	1.13	23.48	2.15
14	ER4a	ExonRegion	0	42.39	38.79	40.08	22.38	31.63	32.33	77.01
15	E4a_E5a	KnownJunction	0	42.41	35.02	37.78	23.52	38.24	35.97	86.65
16	ER5a	ExonRegion	0	56.87	48.37	63.09	34.31	43.95	47.73	98.25
17	E5a_E6a	KnownJunction	0	44.60	38.80	57.85	32.29	27.64	31.89	86.29
18	I5_AR4	ActiveIntronRegion	0	19.66	6.12	12.69	3.97	5.99	2.82	4.54
19	E6_Aa	NovelBoundary	0	14.92	2.99	13.22	2.71	7.26	5.98	7.91
20	ER6a	ExonRegion	0	56.37	33.80	48.31	20.91	40.27	29.65	96.93
21	E6_Da	NovelBoundary	0	25.20	15.24	23.50	10.57	4.01	11.60	12.15
22	E6a_E7a	KnownJunction	0	32.63	27.93	37.62	10.16	32.48	27.04	100.85
23	I6	Intron	0	23.32	10.26	19.53	9.81	7.89	16.52	14.46
24	I6_AR1	ActiveIntronRegion	0	23.38	10.29	19.58	9.83	7.91	16.57	14.51
25	E7_Aa	NovelBoundary	1	10.92	13.79	19.86	20.45	7.58	29.24	15.05
26	ER7a	ExonRegion	0	37.97	39.44	42.52	24.56	41.41	38.64	82.20
27	E7_Da	NovelBoundary	0	12.43	7.20	10.25	8.94	3.25	8.84	6.49
28	E7a_E8a	KnownJunction	0	34.30	44.19	30.97	31.72	36.15	41.49	63.34
29	E8_Aa	NovelBoundary	0	11.13	1.31	8.98	0.00	3.11	3.14	10.36
30	ER8a	ExonRegion	0	49.16	37.31	41.41	30.60	46.35	39.19	80.06
31	E8_Da	NovelBoundary	0	11.08	3.23	15.36	4.52	8.53	5.25	10.36
32	E8a_E9a	KnownJunction	0	43.98	33.92	42.88	26.36	30.38	32.70	89.83
33	E9_Aa	NovelBoundary	1	5.46	2.81	16.47	3.74	4.59	8.07	6.68
34	ER9a	ExonRegion	0	36.17	39.55	42.23	28.99	37.91	27.60	83.09
35	E9_Da	NovelBoundary	0	9.33	2.42	14.53	1.16	8.07	5.49	10.58
36	E9a_E10a	KnownJunction	0	22.55	37.65	31.20	23.27	38.64	26.75	65.44
37	ER10a	ExonRegion	0	33.71	39.68	26.60	33.52	36.16	30.58	75.35
38	E10a_E11a	KnownJunction	0	38.80	46.40	31.84	29.45	35.46	21.98	78.67
39	ER11a	ExonRegion	0	40.92	48.01	29.13	30.78	31.04	32.90	80.51
40	E11a_E12a	KnownJunction	0	43.38	35.02	36.23	24.95	29.32	38.27	63.85
41	ER12a	ExonRegion	0	49.05	42.48	38.81	28.65	31.17	45.87	71.71
42	E12a_E13a	KnownJunction	0	31.78	21.57	25.87	17.34	18.77	32.51	35.89
43	ER13a	ExonRegion	1	23.65	13.96	18.07	8.23	12.72	25.55	20.45