Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NRXN3	Gene	0	2.71	0.12	2.39	2.51	5.56	4.02	0.01
2	332068	Transcript	0	0.47	0.00	0.22	0.29	1.15	0.61	0.00
3	330071	Transcript	0	0.47	0.00	0.47	0.62	0.88	0.93	0.00
4	335750	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	281127	Transcript	0	2.17	0.12	3.00	3.20	4.49	3.39	0.01
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	1.63	1.40	0.00
7	E1a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.50	0.00
8	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.02	0.00
14	E4b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER4b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER6a	ExonRegion	0	0.00	0.00	0.34	0.63	1.38	1.40	0.00
19	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	1.94	2.73	0.00
20	ER7a	ExonRegion	0	0.00	0.00	0.07	0.00	2.56	2.25	0.00
21	E7_Ab	KnownBoundary	0	0.00	0.00	0.52	0.00	4.10	0.00	0.00
22	ER7b	ExonRegion	0	0.00	0.00	0.47	0.54	0.81	0.92	0.00
23	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	1.68	0.00	0.00	0.00
24	ER8a	ExonRegion	0	0.00	0.00	0.12	0.30	1.41	1.90	0.00
25	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER9a	ExonRegion	0	0.00	0.00	0.28	0.00	1.97	1.54	0.00
27	E9a_E10a	KnownJunction	0	0.00	0.00	0.73	0.00	1.01	2.09	0.00
28	ER10a	ExonRegion	0	0.00	0.00	0.55	0.00	2.25	2.62	0.00
29	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E10b_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E10b_E12a	KnownJunction	0	0.00	0.00	1.95	0.00	3.11	0.00	0.00
32	ER10b	ExonRegion	0	0.00	0.00	2.03	0.00	2.43	0.00	0.00
33	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER11b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER12a	ExonRegion	0	0.00	0.00	0.46	0.00	1.99	0.81	0.00
36	E12a_E13a	KnownJunction	0	0.00	0.00	0.52	0.00	4.06	3.14	0.00
37	ER13a	ExonRegion	0	0.00	0.00	0.35	0.00	2.13	0.72	0.00
38	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	3.46	0.00	0.00
39	ER14a	ExonRegion	0	0.00	0.00	0.76	0.00	4.58	2.23	0.00
40	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER15a	ExonRegion	0	0.00	0.00	0.35	0.00	3.68	1.30	0.00
42	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	4.52	0.00	0.00
43	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	1.14	2.50	0.00
44	E16a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.29	0.00
45	ER17a	ExonRegion	0	1.20	0.15	3.29	3.46	3.53	3.18	0.00
46	E17a_E18a	KnownJunction	0	1.72	0.00	5.09	6.45	5.42	3.16	0.00
47	ER18a	ExonRegion	0	4.62	0.00	5.80	6.65	10.71	3.73	0.00
48	E18a_E19a	KnownJunction	0	11.95	0.00	2.77	6.42	6.73	2.89	0.00
49	ER19a	ExonRegion	0	9.11	0.00	6.40	9.05	11.43	8.50	0.00
50	E19a_E20a	KnownJunction	0	0.78	0.00	0.00	1.19	4.38	1.42	0.00
51	E19a_E21a	KnownJunction	0	12.17	0.00	5.10	2.44	6.36	4.18	0.00
52	ER20a	ExonRegion	0	1.50	0.00	0.00	2.01	2.58	2.60	0.00
53	E20a_E21a	KnownJunction	0	2.05	0.00	0.00	0.00	1.82	1.23	0.00
54	ER21a	ExonRegion	0	6.52	0.00	5.80	5.43	13.99	8.63	0.00
55	E21a_E22a	KnownJunction	0	5.74	0.00	7.37	6.99	13.30	16.27	0.00
56	ER22a	ExonRegion	0	5.65	0.00	4.88	2.73	6.96	9.34	0.00
57	E22a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	E22a_E24b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	E22b_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	E22b_E24b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.07	0.00
61	ER22b	ExonRegion	0	1.20	0.00	0.23	0.00	0.99	1.23	0.00
62	ER23a	ExonRegion	0	0.87	0.00	0.45	0.00	0.75	0.00	0.00
63	I23_AR4	ActiveIntronRegion	0	6.85	0.00	4.41	6.56	13.49	11.40	0.00
64	E24_Aa	NovelBoundary	0	5.76	0.00	2.03	3.17	8.37	4.23	0.00
65	ER24a	ExonRegion	0	4.25	0.00	4.25	5.60	7.88	8.33	0.00
66	E24_Ab	KnownBoundary	0	0.72	0.00	4.45	7.34	8.78	5.76	0.00
67	ER24b	ExonRegion	0	3.39	0.21	2.94	10.17	10.14	6.47	0.00
68	E24_Da	KnownBoundary	0	12.38	2.97	9.69	11.00	16.00	11.50	0.00
69	ER24c	ExonRegion	0	5.77	0.31	3.61	2.88	9.00	6.14	0.02
70	IG12_AR11	ActiveIntergenicRegion	0	64.05	0.89	2.74	3.39	0.31	14.42	0.11