Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MAP3K9	Gene	0	68.31	138.52	27.15	52.30	40.30	9.52	163.38
2	381250	Transcript	0	48.00	141.10	26.54	66.62	17.27	14.82	147.16
3	5198	Transcript	0	23.72	41.81	10.92	16.46	17.13	3.71	70.19
4	IG25_SR5	SilentIntergenicRegion	0	3.47	7.68	6.59	31.56	3.49	14.35	3.52
5	IG25_AR4	ActiveIntergenicRegion	0	5.05	12.81	21.87	56.48	5.94	31.81	9.97
6	IG25_AR3	ActiveIntergenicRegion	0	5.41	1.90	2.61	1.22	25.66	0.24	63.64
7	IG25_SR3	SilentIntergenicRegion	0	8.26	2.49	2.26	1.64	9.21	0.24	22.64
8	IG25_AR2	ActiveIntergenicRegion	0	10.87	2.68	3.17	3.33	9.25	0.00	20.68
9	IG25_AR1	ActiveIntergenicRegion	0	15.37	10.82	5.35	7.45	87.94	0.84	150.57
10	ER1a	ExonRegion	0	15.74	73.51	4.36	19.01	5.75	3.65	40.51
11	E1a_E2a	KnownJunction	0	49.82	144.81	16.07	45.32	14.41	4.34	79.42
12	ER2a	ExonRegion	0	64.68	213.67	36.79	62.57	35.56	12.42	163.09
13	E2a_E3a	KnownJunction	0	58.26	175.15	28.88	74.91	31.81	15.65	173.87
14	E2a_E4a	NovelJunction	0	7.24	11.80	5.66	5.85	0.00	3.16	3.11
15	ER3a	ExonRegion	0	64.63	190.69	32.31	65.89	44.00	11.06	202.11
16	E3a_E4a	KnownJunction	0	63.74	198.43	27.43	59.60	37.09	6.03	212.31
17	ER4a	ExonRegion	0	75.62	216.55	35.08	58.52	51.21	9.91	216.64
18	E4a_E5a	KnownJunction	0	125.81	211.64	35.95	50.74	69.18	9.59	242.22
19	E4a_E6a	NovelJunction	1	0.00	15.58	0.00	0.00	0.00	0.00	0.00
20	ER5a	ExonRegion	0	119.42	194.78	43.19	69.67	53.22	9.40	197.64
21	E5a_E6a	KnownJunction	0	99.92	155.66	33.35	69.90	62.82	6.70	147.00
22	ER6a	ExonRegion	0	70.41	156.70	28.32	56.69	36.66	7.65	154.51
23	E6a_E7a	KnownJunction	0	49.52	170.11	22.36	69.00	26.10	10.21	157.75
24	ER7a	ExonRegion	0	44.07	163.02	20.65	58.89	30.39	10.47	153.53
25	E7_Da	NovelBoundary	0	5.89	22.83	6.16	15.52	0.00	1.29	16.45
26	E7a_E8a	KnownJunction	0	36.00	149.25	23.47	35.00	32.34	17.69	134.64
27	ER8a	ExonRegion	0	33.62	123.90	17.85	49.65	20.26	7.78	102.63
28	E8a_E9a	KnownJunction	1	8.65	9.59	4.01	6.77	0.00	0.00	71.74
29	E8a_E10a	NovelJunction	0	45.26	161.94	18.06	58.33	38.27	14.79	89.54
30	I8_AR3	ActiveIntronRegion	0	17.87	7.07	5.40	1.56	1.27	0.00	20.47
31	ER9a	ExonRegion	1	9.46	12.71	4.20	7.86	0.83	3.48	75.16
32	E9a_E10a	KnownJunction	1	10.65	13.16	2.70	7.04	0.00	5.92	63.33
33	ER10a	ExonRegion	0	39.76	119.45	16.59	48.74	18.88	6.85	123.83
34	E10a_E11a	KnownJunction	0	2.82	24.43	1.26	4.50	0.99	0.00	17.10
35	E10a_E12a	KnownJunction	0	48.00	141.10	26.54	66.62	17.27	14.82	147.16
36	ER11a	ExonRegion	0	6.24	22.07	2.27	5.52	1.60	2.31	24.32
37	E11a_E12a	KnownJunction	1	6.34	18.76	3.10	5.74	1.06	3.32	25.85
38	ER12a	ExonRegion	0	81.19	184.32	23.11	66.80	32.29	15.24	184.15
39	E12a_E13a	KnownJunction	0	89.69	138.32	24.82	64.02	44.12	15.22	191.05
40	ER13a	ExonRegion	0	71.49	133.13	22.47	51.08	34.18	8.14	134.93
41	E13_Da	KnownBoundary	0	96.25	109.66	35.68	36.65	69.69	10.00	200.42
42	ER13b	ExonRegion	0	79.47	101.97	37.06	50.07	64.86	9.22	213.49
43	IG24	Intergenic	0	18.50	19.79	5.48	8.67	13.32	1.47	40.15
44	IG24_SR8	SilentIntergenicRegion	0	21.07	16.50	10.16	7.48	27.41	0.00	46.16
45	IG24_AR10	ActiveIntergenicRegion	0	39.03	65.63	19.09	33.22	40.33	2.97	144.18
46	IG24_SR7	SilentIntergenicRegion	0	114.78	99.68	37.84	51.85	73.00	5.90	214.45
47	IG24_AR9	ActiveIntergenicRegion	0	91.46	85.94	29.30	46.78	78.99	7.08	223.64
48	IG24_AR7	ActiveIntergenicRegion	0	21.30	39.06	2.15	0.51	0.54	1.34	5.67
49	IG24_AR6	ActiveIntergenicRegion	0	8.90	43.93	2.60	2.10	0.81	1.23	3.69
50	IG24_AR5	ActiveIntergenicRegion	0	9.04	44.02	1.20	1.63	0.37	1.23	2.44
51	IG24_SR5	SilentIntergenicRegion	0	19.43	34.50	1.53	1.55	0.50	2.33	6.60
52	IG24_AR4	ActiveIntergenicRegion	0	10.24	51.47	1.62	1.63	0.69	4.47	8.76
53	IG24_AR2	ActiveIntergenicRegion	0	30.01	54.30	2.75	3.71	0.40	3.92	9.58
54	IG24_AR1	ActiveIntergenicRegion	0	9.93	10.53	0.00	0.73	0.00	0.35	2.06