Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ISGF3G	Gene	0	37.94	34.53	36.99	29.96	12.59	39.96	73.69
2	324076	Transcript	0	1.42	1.59	1.32	1.62	1.01	0.85	1.22
3	396864	Transcript	0	0	0	0	0	0	0	0
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	Ix_AR1	ActiveIntronRegion	0	12.53	5.49	10.47	5.65	11.50	1.40	11.44
11	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	Ix_AR2	ActiveIntronRegion	0	1.54	5.21	2.03	8.73	0.81	7.36	2.70
22	Ix_AR3	ActiveIntronRegion	0	5.38	7.49	3.93	7.79	1.76	8.00	3.97
23	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	Ix	Intron	0	7.15	11.20	1.98	10.15	1.27	7.15	1.17
26	Ix_SR1	SilentIntronRegion	0	7.36	11.48	2.04	10.39	1.31	7.33	1.20
27	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	Ix	Intron	0	10.91	10.55	8.43	6.62	7.21	8.57	7.32
30	Ix_AR1	ActiveIntronRegion	0	10.94	10.59	8.46	6.64	7.23	8.59	7.34
31	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	Ix	Intron	0	6.50	9.28	3.68	9.20	1.32	10.03	5.16
34	Ix_SR1	SilentIntronRegion	0	4.73	9.70	2.42	7.43	0.71	9.45	4.90
35	Ix_AR1	ActiveIntronRegion	0	8.80	8.90	5.30	11.54	2.07	10.91	5.57
36	ER12a	ExonRegion	0	0.78	1.15	2.00	0.13	1.16	0.00	0.91
37	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER13a	ExonRegion	0	6.68	15.88	8.57	12.78	6.74	4.52	9.96
39	E13_Ab	KnownBoundary	1	4.02	14.03	7.27	18.45	1.08	4.13	11.48
40	ER13b	ExonRegion	0	39.08	28.07	27.87	23.52	14.62	22.90	56.33
41	E13a_E14a	KnownJunction	0	275.45	122.37	169.74	113.05	54.43	132.36	379.94
42	I13	Intron	0	6.66	11.52	4.95	6.90	1.40	10.39	3.79
43	I13_SR1	SilentIntronRegion	0	6.70	11.62	4.99	6.94	1.41	10.44	3.80
44	E14_Aa	NovelBoundary	1	24.07	20.70	12.10	16.28	4.24	15.14	3.53
45	ER14a	ExonRegion	0	154.53	110.11	115.04	88.87	30.09	116.40	236.70
46	E14_Da	NovelBoundary	1	16.21	24.64	8.56	22.24	0.00	10.00	4.18
47	E14a_E15a	KnownJunction	0	213.13	97.86	179.01	81.90	38.36	118.19	304.61
48	I14_AR1	ActiveIntronRegion	0	6.15	7.03	3.11	10.58	0.00	6.33	1.77
49	E15_Aa	NovelBoundary	0	1.59	13.21	2.80	11.68	1.06	13.56	1.68
50	ER15a	ExonRegion	0	84.37	102.06	98.02	67.40	30.74	129.69	226.71
51	E15_Da	NovelBoundary	1	4.82	17.26	2.97	2.79	0.00	12.06	3.91
52	E15a_E16a	KnownJunction	0	89.21	102.14	104.27	78.54	25.34	168.97	238.80
53	I15	Intron	0	2.05	10.10	3.30	5.82	0.18	4.50	2.91
54	I15_AR1	ActiveIntronRegion	0	1.74	8.87	3.13	4.74	0.32	6.40	2.88
55	I15_SR1	SilentIntronRegion	1	2.52	12.02	3.59	7.43	0.00	1.95	3.01
56	E16_Aa	NovelBoundary	1	0.75	16.97	4.07	8.45	0.00	1.21	3.61
57	ER16a	ExonRegion	0	76.87	107.95	99.88	77.50	22.09	123.39	259.53
58	E16_Da	NovelBoundary	0	3.87	14.24	7.72	7.59	0.00	4.37	7.01
59	E16a_E17a	KnownJunction	0	47.92	77.71	67.96	66.29	11.13	114.22	183.44
60	E16a_E18a	NovelJunction	1	0.00	0.00	1.93	9.83	0.00	3.27	12.45
61	E17_Aa	NovelBoundary	0	11.28	3.94	9.99	9.08	1.01	9.97	2.19
62	ER17a	ExonRegion	0	58.31	82.23	73.12	52.98	19.78	101.17	197.52
63	E17_Da	NovelBoundary	0	2.32	3.65	6.05	12.46	0.00	2.79	4.50
64	E17a_E18a	KnownJunction	0	68.65	76.95	88.79	43.18	32.27	84.79	215.01
65	E18_Aa	NovelBoundary	1	8.21	13.08	13.16	7.67	1.13	0.00	7.81
66	ER18a	ExonRegion	0	73.81	68.47	95.91	50.54	31.44	113.51	219.28
67	E18_Da	NovelBoundary	0	27.89	14.87	22.62	23.27	4.40	19.32	38.21
68	E18a_E19a	KnownJunction	0	70.60	64.10	83.35	61.12	21.85	132.50	212.66
69	I18	Intron	0	22.22	18.86	17.03	14.83	8.68	9.72	24.02
70	I18_AR1	ActiveIntronRegion	0	22.31	18.92	17.10	14.90	8.71	9.76	24.11
71	E19_Aa	NovelBoundary	0	47.40	25.80	36.26	19.05	6.73	11.85	33.64
72	ER19a	ExonRegion	0	77.74	73.12	76.42	67.29	16.32	98.80	183.03
73	E19_Da	NovelBoundary	0	16.76	12.22	12.26	9.02	3.02	13.72	16.28
74	E19a_E20a	KnownJunction	0	74.37	53.59	69.95	62.23	6.39	92.70	187.70
75	I19	Intron	1	15.69	19.87	13.10	15.71	5.41	7.74	14.28
76	I19_AR1	ActiveIntronRegion	1	16.55	20.07	13.58	16.57	5.95	7.85	15.05
77	I19_SR1	SilentIntronRegion	0	18.50	24.35	15.58	16.65	4.31	12.33	14.63
78	I19_AR2	ActiveIntronRegion	0	12.68	20.41	14.90	12.84	3.24	9.32	9.78
79	I19_AR3	ActiveIntronRegion	1	9.14	21.60	12.02	11.32	1.86	6.27	10.64
80	I19_AR4	ActiveIntronRegion	1	3.75	10.28	3.16	5.14	1.32	0.59	5.76
81	E20_Aa	NovelBoundary	0	14.14	11.61	13.36	18.61	4.20	17.29	14.76
82	ER20a	ExonRegion	0	81.73	74.79	83.74	68.37	26.53	99.83	189.60
83	E20_Da	NovelBoundary	0	6.61	10.27	3.78	7.37	0.00	5.47	13.34
84	E20a_E21a	KnownJunction	0	77.84	88.04	81.16	65.18	35.09	91.60	190.58
85	I20	Intron	1	5.72	9.26	4.10	11.90	1.04	3.52	8.02
86	I20_SR1	SilentIntronRegion	1	5.84	9.50	4.20	12.21	1.07	3.61	8.20
87	E21_Aa	NovelBoundary	0	13.62	17.60	13.81	16.17	0.00	8.28	22.59
88	ER21a	ExonRegion	0	96.48	68.67	99.01	63.30	23.55	101.79	179.21
89	E21_Da	KnownBoundary	0	16.77	12.53	18.67	14.11	1.96	11.34	17.47
90	ER21b	ExonRegion	0	29.43	24.24	23.88	29.30	18.46	17.51	20.73
91	IG9	Intergenic	0	29.42	12.63	16.63	17.96	2.18	14.88	24.93
92	IG9_SR1	SilentIntergenicRegion	0	30.10	17.38	21.00	24.84	1.77	22.64	32.47
93	IG9_AR1	ActiveIntergenicRegion	0	34.63	19.98	21.85	27.53	3.73	22.86	40.64
94	IG9_AR2	ActiveIntergenicRegion	0	14.57	5.39	6.74	7.02	0.00	1.59	9.74
95	IG9_SR2	SilentIntergenicRegion	0	43.06	10.18	19.17	14.62	2.32	11.87	18.48
96	IG9_AR4	ActiveIntergenicRegion	0	4.34	4.29	5.17	7.40	0.15	6.66	9.80