Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SPG3A	Gene	0	55.83	9.56	62.79	18.80	45.92	26.95	71.58
2	357032	Transcript	0	0.44	0.00	1.88	2.79	8.07	1.44	4.79
3	358385	Transcript	0	0.13	0.00	0.05	0.04	0.13	0.12	0.07
4	354525	Transcript	1	14.60	4.94	21.35	9.45	24.53	18.92	67.69
5	ER1a	ExonRegion	0	9.73	4.12	12.41	7.30	15.70	7.48	26.40
6	E1a_E2a	KnownJunction	0	23.12	4.60	16.68	17.31	19.80	5.79	29.90
7	E2_Aa	NovelBoundary	0	8.03	13.56	1.75	10.21	0.00	12.54	1.40
8	ER2a	ExonRegion	0	31.06	13.67	43.13	24.04	31.73	35.02	79.50
9	E2_Da	NovelBoundary	0	3.77	1.00	5.65	4.61	0.00	12.25	1.58
10	E2a_E3a	KnownJunction	1	26.30	11.14	65.40	12.57	54.75	36.34	84.91
11	E3_Aa	NovelBoundary	0	2.27	2.84	3.36	2.71	0.00	8.23	1.75
12	ER3a	ExonRegion	1	30.46	11.81	63.77	18.39	39.66	44.56	92.75
13	E3_Da	NovelBoundary	1	4.14	0.00	3.33	1.00	0.00	12.22	0.64
14	E3a_E4a	KnownJunction	1	31.28	10.30	73.65	15.36	40.62	56.68	101.95
15	I3	Intron	1	4.66	0.39	3.31	1.86	0.18	9.94	0.22
16	I3_SR2	SilentIntronRegion	1	4.57	1.25	4.72	1.78	0.40	11.54	0.29
17	I3_AR1	ActiveIntronRegion	1	5.89	1.01	5.87	3.74	0.00	20.84	0.67
18	I3_SR3	SilentIntronRegion	1	5.15	0.00	2.98	2.08	0.13	9.89	0.22
19	ER4a	ExonRegion	0	53.63	9.51	80.32	16.91	54.24	40.33	108.80
20	E4_Da	NovelBoundary	1	27.82	0.00	29.83	8.56	0.00	15.41	0.72
21	E4a_E5a	KnownJunction	1	46.92	5.12	52.64	7.15	52.35	31.33	78.02
22	ER5a	ExonRegion	1	51.26	5.45	68.80	10.34	61.91	36.73	96.73
23	E5a_E6a	KnownJunction	1	41.94	7.22	61.63	9.37	69.67	32.45	94.49
24	I5_SR2	SilentIntronRegion	1	4.59	0.45	8.02	5.74	0.90	7.91	3.48
25	ER6a	ExonRegion	0	62.22	10.68	79.86	15.14	68.58	27.62	113.02
26	E6a_E7a	KnownJunction	0	70.03	10.53	81.94	15.47	61.32	25.38	98.79
27	ER7a	ExonRegion	0	72.47	11.18	84.24	16.25	47.66	32.68	93.14
28	E7a_E8a	KnownJunction	0	81.40	6.57	90.86	15.58	48.80	25.14	87.74
29	ER8a	ExonRegion	0	102.33	7.05	94.15	19.14	77.47	38.61	92.66
30	E8a_E9a	KnownJunction	0	113.09	6.94	89.08	20.10	52.61	37.92	106.51
31	E9_Aa	NovelBoundary	1	25.72	6.99	13.87	8.56	0.99	7.56	3.80
32	ER9a	ExonRegion	1	81.78	4.21	70.13	15.12	57.41	27.56	91.50
33	E9_Da	NovelBoundary	1	26.07	1.16	24.83	7.78	3.27	5.23	4.50
34	E9a_E10a	KnownJunction	0	35.37	3.99	38.81	8.37	45.64	11.04	74.94
35	E10_Aa	NovelBoundary	1	16.87	4.12	13.71	0.00	1.84	3.51	2.58
36	ER10a	ExonRegion	0	41.95	6.97	46.00	7.48	50.34	17.66	78.97
37	E10_Da	NovelBoundary	1	16.44	1.31	12.21	1.16	2.19	3.08	1.61
38	E10a_E11a	KnownJunction	0	49.77	8.67	42.88	10.54	48.80	26.99	70.87
39	E11_Aa	NovelBoundary	1	19.51	2.68	3.56	3.93	1.18	2.49	0.66
40	ER11a	ExonRegion	0	51.42	8.35	51.71	13.73	41.48	23.98	90.36
41	E11_Da	NovelBoundary	1	18.21	6.23	11.37	1.65	2.05	0.00	0.89
42	E11a_E12a	KnownJunction	0	44.21	5.25	61.72	11.84	43.45	20.88	97.71
43	I11	Intron	1	18.73	3.91	21.31	5.97	9.95	5.43	2.70
44	I11_SR1	SilentIntronRegion	1	18.77	3.92	21.36	5.99	9.98	5.43	2.70
45	E12_Aa	NovelBoundary	0	14.14	15.34	16.94	23.52	21.44	26.29	7.22
46	ER12a	ExonRegion	0	81.34	17.34	84.77	37.41	76.44	43.12	104.76
47	E12_Da	NovelBoundary	1	31.64	13.82	43.38	26.85	39.14	16.62	13.92
48	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E12a_E14a	KnownJunction	0	0.00	0.00	1.78	3.01	7.28	1.66	5.36
50	E12a_E15a	KnownJunction	1	14.60	4.94	21.35	9.45	24.53	18.92	67.69
51	ER13a	ExonRegion	0	0.26	0.00	0.09	0.08	0.27	0.25	0.13
52	I13	Intron	0	17.64	2.19	18.01	3.92	10.08	4.20	2.95
53	I13_AR1	ActiveIntronRegion	1	23.98	6.31	28.38	7.92	16.93	7.05	2.74
54	I13_SR1	SilentIntronRegion	0	16.44	1.39	16.01	3.14	8.75	3.65	3.00
55	ER14a	ExonRegion	0	0.87	0.00	1.99	2.58	8.85	1.23	4.23
56	I14	Intron	1	29.95	3.93	33.83	6.92	12.96	5.04	5.98
57	I14_SR1	SilentIntronRegion	0	29.81	3.50	32.53	5.46	11.72	3.69	5.86
58	I14_SR2	SilentIntronRegion	0	33.62	4.97	36.24	10.19	15.54	7.29	6.91
59	I14_AR2	ActiveIntronRegion	1	19.13	2.58	35.46	1.42	9.54	3.31	3.25
60	E15_Aa	NovelBoundary	1	36.80	2.84	28.86	5.61	12.03	5.25	8.84
61	ER15a	ExonRegion	0	54.29	6.97	60.21	13.77	32.57	14.22	40.30
62	IG50	Intergenic	0	68.70	23.02	49.19	21.14	31.51	24.38	12.51
63	IG50_AR1	ActiveIntergenicRegion	0	68.90	23.10	49.34	21.21	31.61	24.44	12.55