Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ATP5S	Gene	0	16.59	17.31	12.15	9.76	46.99	15.44	29.98
2	245448	Transcript	1	1.45	7.20	1.14	2.63	4.31	2.33	9.27
3	311459	Transcript	0	0	0	0	0	0	0	0
4	358473	Transcript	0	0.73	1.52	0.59	1.13	2.88	2.32	0.81
5	ER1a	ExonRegion	0	1.46	2.51	0.84	1.81	3.46	0.61	1.35
6	E1a_E3a	KnownJunction	0	0.00	1.16	0.00	0.00	0.00	2.20	0.75
7	E2_Aa	NovelBoundary	1	4.01	6.78	3.46	0.00	4.36	13.21	0.89
8	ER2a	ExonRegion	0	0.00	0.00	0.00	0.02	1.80	0.02	0.00
9	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	I2	Intron	1	4.20	5.13	6.40	6.94	4.52	23.70	2.89
11	I2_AR1	ActiveIntronRegion	1	10.26	8.93	13.97	11.42	8.06	42.86	4.35
12	I2_SR2	SilentIntronRegion	1	1.18	4.03	4.04	6.74	2.80	15.41	1.85
13	E3_Aa	NovelBoundary	0	1.74	3.86	4.73	0.00	4.70	9.09	4.23
14	ER3a	ExonRegion	0	7.85	22.64	9.39	5.85	44.14	15.41	27.50
15	E3_Da	NovelBoundary	1	2.55	0.00	4.24	0.00	0.00	13.29	0.00
16	E3a_E4a	KnownJunction	0	19.79	33.68	14.07	19.21	46.59	15.54	36.76
17	I3	Intron	1	1.97	1.69	5.72	2.07	1.10	15.65	0.81
18	I3_AR1	ActiveIntronRegion	1	1.97	1.69	5.73	2.07	1.10	15.69	0.81
19	E4_Aa	NovelBoundary	1	0.87	2.76	6.94	7.94	0.00	28.41	3.12
20	ER4a	ExonRegion	0	33.96	55.06	21.80	29.47	106.42	43.23	72.84
21	E4_Da	NovelBoundary	1	21.63	10.61	11.84	14.68	30.27	33.87	12.47
22	E4a_E5a	KnownJunction	0	37.55	47.10	22.14	29.04	87.65	24.28	80.83
23	E4a_E6a	KnownJunction	1	1.45	7.20	1.14	2.63	4.31	2.33	9.27
24	I4	Intron	1	4.22	6.17	6.65	6.93	11.52	18.62	4.88
25	I4_AR1	ActiveIntronRegion	1	6.02	8.53	9.04	8.78	15.68	25.42	6.95
26	E5_Aa	NovelBoundary	1	3.66	0.00	11.68	4.12	9.82	30.52	6.62
27	ER5a	ExonRegion	0	60.16	50.01	38.55	25.96	137.76	53.42	103.35
28	E5_Da	NovelBoundary	1	11.25	8.56	10.61	6.72	21.78	22.30	9.17
29	E5a_E6a	KnownJunction	0	43.41	32.34	27.30	21.32	118.35	24.09	74.90
30	I5	Intron	0	3.79	2.79	5.98	2.95	8.89	10.35	3.14
31	I5_AR1	ActiveIntronRegion	0	1.68	2.12	7.85	4.00	9.33	8.75	4.40
32	I5_AR2	ActiveIntronRegion	1	4.71	3.64	3.61	4.04	12.01	14.28	3.20
33	I5_SR2	SilentIntronRegion	0	4.29	2.76	7.17	2.13	7.54	9.26	2.86
34	E6_Aa	NovelBoundary	1	0.93	3.02	9.08	3.49	7.08	4.10	1.25
35	ER6a	ExonRegion	0	53.08	37.00	36.98	22.07	143.04	28.30	86.48
36	E6_Da	KnownBoundary	0	66.39	31.16	47.21	20.91	174.65	36.34	77.72
37	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER6b	ExonRegion	0	32.94	20.14	28.72	14.67	97.24	18.98	56.83
39	E6_Db	NovelBoundary	0	17.62	24.14	12.09	11.89	62.40	12.81	36.72
40	I6	Intron	1	20.45	13.68	26.19	11.36	41.26	37.60	26.46
41	I6_AR1	ActiveIntronRegion	1	45.78	23.97	33.11	21.64	98.74	62.21	57.03
42	I6_SR2	SilentIntronRegion	1	3.64	2.71	10.62	4.59	23.52	9.18	10.07
43	I6_AR3	ActiveIntronRegion	1	14.57	11.18	26.12	7.60	25.06	34.98	19.85
44	I6_SR3	SilentIntronRegion	1	6.92	9.97	15.12	11.13	23.30	26.94	12.39
45	I6_AR5	ActiveIntronRegion	1	15.02	11.80	29.77	8.52	21.69	29.93	17.22
46	Ix	Intron	0	7.41	6.00	5.84	5.38	22.63	6.41	7.29
47	Ix_AR1	ActiveIntronRegion	0	6.37	2.82	6.01	4.70	17.50	2.70	5.27
48	Ix_SR1	SilentIntronRegion	0	5.37	2.94	5.41	3.82	16.31	1.63	4.43
49	Ix_AR2	ActiveIntronRegion	0	10.95	7.26	7.50	7.95	30.21	10.25	9.48
50	Ix_SR2	SilentIntronRegion	0	7.48	10.17	5.04	5.07	26.40	9.64	10.01
51	Ix_AR3	ActiveIntronRegion	0	1.62	6.62	2.34	2.36	12.88	6.09	5.18
52	E7_Aa	NovelBoundary	1	2.39	5.39	2.86	4.88	11.39	12.81	9.30
53	ER7a	ExonRegion	0	4.35	7.31	3.03	3.97	13.81	12.97	3.34
54	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	Ix	Intron	0	4.71	4.09	4.09	2.83	13.77	3.89	4.67
56	Ix_AR1	ActiveIntronRegion	0	3.69	8.31	7.42	4.33	16.52	10.77	7.57
57	Ix_SR1	SilentIntronRegion	0	4.88	4.00	4.06	2.83	13.53	3.31	4.59
58	Ix_AR2	ActiveIntronRegion	0	4.20	1.52	1.78	1.59	13.80	3.21	3.07
59	ER8a	ExonRegion	0	0.00	1.83	0.51	2.79	1.65	0.91	1.50